miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
1374	3'	-54.4	NC_001335.1	+	16140	0.66	0.761029
	Target:  5'- cCUAGAUCUccGAgCCcCCGGCUGCcgcCGAg -3' miRNA:   3'- -GGUCUAGA--CUaGGcGGCCGAUGu--GCU- -5'
1374	3'	-54.4	NC_001335.1	+	30922	0.66	0.750712
	Target:  5'- cUCGGGUCauuaguggUGAUCCcCCGGacggUGCGCGAg -3' miRNA:   3'- -GGUCUAG--------ACUAGGcGGCCg---AUGUGCU- -5'
1374	3'	-54.4	NC_001335.1	+	30850	0.66	0.750712
	Target:  5'- gCGGAguuauUCCGCCGGgUAgACGAg -3' miRNA:   3'- gGUCUagacuAGGCGGCCgAUgUGCU- -5'
1374	3'	-54.4	NC_001335.1	+	17174	0.67	0.708348
	Target:  5'- aCCAGuacGUCggaGAUCUGCUGGaagcuCUGCAUGAg -3' miRNA:   3'- -GGUC---UAGa--CUAGGCGGCC-----GAUGUGCU- -5'
1374	3'	-54.4	NC_001335.1	+	26643	0.67	0.708348
	Target:  5'- cCCGG--CUGAUCCGCgUGGa-GCGCGAg -3' miRNA:   3'- -GGUCuaGACUAGGCG-GCCgaUGUGCU- -5'
1374	3'	-54.4	NC_001335.1	+	12611	0.67	0.683398
	Target:  5'- -uGGcgCUGAUCgagCGCCGGCUccagcagaucgagcGCAUGAu -3' miRNA:   3'- ggUCuaGACUAG---GCGGCCGA--------------UGUGCU- -5'
1374	3'	-54.4	NC_001335.1	+	33793	0.67	0.683398
	Target:  5'- cCCGGAUCaGGUCgagguagucggucuUGCCGGCcggcguCACGAa -3' miRNA:   3'- -GGUCUAGaCUAG--------------GCGGCCGau----GUGCU- -5'
1374	3'	-54.4	NC_001335.1	+	6927	0.73	0.350526
	Target:  5'- aCCGcGAgggCgUGAUCCGCCGGCUcaaggGCugGGg -3' miRNA:   3'- -GGU-CUa--G-ACUAGGCGGCCGA-----UGugCU- -5'
1374	3'	-54.4	NC_001335.1	+	45829	0.74	0.325968
	Target:  5'- uCCAacUCUGGuUCCGCUGGCgcuCACGAg -3' miRNA:   3'- -GGUcuAGACU-AGGCGGCCGau-GUGCU- -5'
1374	3'	-54.4	NC_001335.1	+	27432	1.11	0.000898
	Target:  5'- cCCAGAUCUGAUCCGCCGGCUACACGAg -3' miRNA:   3'- -GGUCUAGACUAGGCGGCCGAUGUGCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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