miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1374 5' -58.8 NC_001335.1 + 45565 0.66 0.559759
Target:  5'- cGCCAC--CG-AGGACGAGGCCa--- -3'
miRNA:   3'- cCGGUGcaGCuUCCUGCUCCGGgcac -5'
1374 5' -58.8 NC_001335.1 + 40637 0.66 0.518361
Target:  5'- cGUCgGCGUCGGAGGuacacgcggaGAGGCCCa-- -3'
miRNA:   3'- cCGG-UGCAGCUUCCug--------CUCCGGGcac -5'
1374 5' -58.8 NC_001335.1 + 46118 0.67 0.508196
Target:  5'- cGUCAUGUgacgaaucacCGAAGGGCGAaGCCCGc- -3'
miRNA:   3'- cCGGUGCA----------GCUUCCUGCUcCGGGCac -5'
1374 5' -58.8 NC_001335.1 + 37405 0.67 0.488127
Target:  5'- cGCgGCGUCGAguucaccccggAGGACGuGGCCg--- -3'
miRNA:   3'- cCGgUGCAGCU-----------UCCUGCuCCGGgcac -5'
1374 5' -58.8 NC_001335.1 + 13442 0.67 0.468438
Target:  5'- cGCCAC-UCGAucuGGGACuGGGCCCc-- -3'
miRNA:   3'- cCGGUGcAGCU---UCCUGcUCCGGGcac -5'
1374 5' -58.8 NC_001335.1 + 29166 0.68 0.445363
Target:  5'- gGGCUGCGUCagcggucaucuGGugGAGGUCCGc- -3'
miRNA:   3'- -CCGGUGCAGcuu--------CCugCUCCGGGCac -5'
1374 5' -58.8 NC_001335.1 + 13516 0.68 0.411981
Target:  5'- cGGCCcgguACGUCGAgacgaGGGACGccGUCCGa- -3'
miRNA:   3'- -CCGG----UGCAGCU-----UCCUGCucCGGGCac -5'
1374 5' -58.8 NC_001335.1 + 1169 0.68 0.402987
Target:  5'- aGGCgGCGUCGGAGG-CGGGGgUgGa- -3'
miRNA:   3'- -CCGgUGCAGCUUCCuGCUCCgGgCac -5'
1374 5' -58.8 NC_001335.1 + 19452 0.68 0.402987
Target:  5'- cGGCCugGUCGcuGGcgaGCGGGuGCUCGa- -3'
miRNA:   3'- -CCGGugCAGCuuCC---UGCUC-CGGGCac -5'
1374 5' -58.8 NC_001335.1 + 50600 0.69 0.359105
Target:  5'- cGGCCACGUCGGGcacGGuucggcacaagcuACGAGGUgCCGaUGg -3'
miRNA:   3'- -CCGGUGCAGCUU---CC-------------UGCUCCG-GGC-AC- -5'
1374 5' -58.8 NC_001335.1 + 16067 0.69 0.351715
Target:  5'- cGGUUACGUCGAccGGGACGugaacGCCCuUGg -3'
miRNA:   3'- -CCGGUGCAGCU--UCCUGCuc---CGGGcAC- -5'
1374 5' -58.8 NC_001335.1 + 16513 0.7 0.305244
Target:  5'- cGGCCAUGUucaCGAGGccCGAGGCCaCGUu -3'
miRNA:   3'- -CCGGUGCA---GCUUCcuGCUCCGG-GCAc -5'
1374 5' -58.8 NC_001335.1 + 40049 0.71 0.270232
Target:  5'- cGGagACGUUGc-GGGCGAGGCCgGUGa -3'
miRNA:   3'- -CCggUGCAGCuuCCUGCUCCGGgCAC- -5'
1374 5' -58.8 NC_001335.1 + 16632 0.72 0.244609
Target:  5'- cGCCuGCGUgccgguagCGAgcacAGGGcCGAGGCCCGUGa -3'
miRNA:   3'- cCGG-UGCA--------GCU----UCCU-GCUCCGGGCAC- -5'
1374 5' -58.8 NC_001335.1 + 12209 0.75 0.161689
Target:  5'- cGUCACGUCGAAGGAC-AGGCCg--- -3'
miRNA:   3'- cCGGUGCAGCUUCCUGcUCCGGgcac -5'
1374 5' -58.8 NC_001335.1 + 27394 1.1 0.000399
Target:  5'- aGGCCACGUCGAAGGACGAGGCCCGUGa -3'
miRNA:   3'- -CCGGUGCAGCUUCCUGCUCCGGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.