miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1375 3' -57 NC_001335.1 + 46102 0.66 0.645608
Target:  5'- -aCCGaAGGGCgaaGCCCGccgggacaacGACAACcgGGa -3'
miRNA:   3'- ggGGC-UCCUGa--CGGGC----------CUGUUGuaCC- -5'
1375 3' -57 NC_001335.1 + 14846 0.66 0.645608
Target:  5'- uUCCCGAGGGCUGauCCCaacuuGACAGCc--- -3'
miRNA:   3'- -GGGGCUCCUGAC--GGGc----CUGUUGuacc -5'
1375 3' -57 NC_001335.1 + 38278 0.66 0.63486
Target:  5'- -aCCG-GGGCUGCCUGG-CGAUuccguauaugcgGUGGu -3'
miRNA:   3'- ggGGCuCCUGACGGGCCuGUUG------------UACC- -5'
1375 3' -57 NC_001335.1 + 8173 0.67 0.613364
Target:  5'- uCCuuGAGGGCgagGUCUGGcACGACGg-- -3'
miRNA:   3'- -GGggCUCCUGa--CGGGCC-UGUUGUacc -5'
1375 3' -57 NC_001335.1 + 4596 0.67 0.602636
Target:  5'- uCCCCGccaAGGACucgaaccucaauUGCCCGGucCAgaGCcgGGu -3'
miRNA:   3'- -GGGGC---UCCUG------------ACGGGCCu-GU--UGuaCC- -5'
1375 3' -57 NC_001335.1 + 13880 0.67 0.602636
Target:  5'- cCCCCGAcuggagGGAgUGa-CGGucACGACAUGGg -3'
miRNA:   3'- -GGGGCU------CCUgACggGCC--UGUUGUACC- -5'
1375 3' -57 NC_001335.1 + 13926 0.67 0.602636
Target:  5'- aCCgGAGGAucggggccgcuaCUGCCUGGAC-GCGaGGc -3'
miRNA:   3'- gGGgCUCCU------------GACGGGCCUGuUGUaCC- -5'
1375 3' -57 NC_001335.1 + 26269 0.67 0.570627
Target:  5'- gCCCGaAGGcCaGCCCaGGgGGCAUGGu -3'
miRNA:   3'- gGGGC-UCCuGaCGGGcCUgUUGUACC- -5'
1375 3' -57 NC_001335.1 + 31718 0.68 0.539047
Target:  5'- gCCCGAuGG-UUGCCCGuGACGAcCAUcGGu -3'
miRNA:   3'- gGGGCU-CCuGACGGGC-CUGUU-GUA-CC- -5'
1375 3' -57 NC_001335.1 + 24912 0.68 0.508085
Target:  5'- gCCCgGAGGACguuguaggcaUGCCggCGGGCAGUcgGGg -3'
miRNA:   3'- -GGGgCUCCUG----------ACGG--GCCUGUUGuaCC- -5'
1375 3' -57 NC_001335.1 + 49798 0.68 0.497929
Target:  5'- uUCCGAcGGcggugcGCUGCCCGGAgAACAa-- -3'
miRNA:   3'- gGGGCU-CC------UGACGGGCCUgUUGUacc -5'
1375 3' -57 NC_001335.1 + 1632 0.68 0.497929
Target:  5'- uCCUCGAGGAC-GCCUGGuuCGGCGc-- -3'
miRNA:   3'- -GGGGCUCCUGaCGGGCCu-GUUGUacc -5'
1375 3' -57 NC_001335.1 + 13421 0.7 0.429669
Target:  5'- gCCCCGAGGAUgccgUGCUCcuuGGugAACGagcgGGg -3'
miRNA:   3'- -GGGGCUCCUG----ACGGG---CCugUUGUa---CC- -5'
1375 3' -57 NC_001335.1 + 2546 0.71 0.342447
Target:  5'- gCCgCCGAGGGCguaGCCCG-ACGGCG-GGa -3'
miRNA:   3'- -GG-GGCUCCUGa--CGGGCcUGUUGUaCC- -5'
1375 3' -57 NC_001335.1 + 6330 0.71 0.342447
Target:  5'- uCCUCGAGGAUgcccaucgUGUCCGaGGCAGCGaccUGGu -3'
miRNA:   3'- -GGGGCUCCUG--------ACGGGC-CUGUUGU---ACC- -5'
1375 3' -57 NC_001335.1 + 12146 0.73 0.26874
Target:  5'- -gCCGAcGACcgUGCCCGaGGCGACGUGGu -3'
miRNA:   3'- ggGGCUcCUG--ACGGGC-CUGUUGUACC- -5'
1375 3' -57 NC_001335.1 + 28148 1.11 0.000551
Target:  5'- uCCCCGAGGACUGCCCGGACAACAUGGu -3'
miRNA:   3'- -GGGGCUCCUGACGGGCCUGUUGUACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.