Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1375 | 5' | -56.9 | NC_001335.1 | + | 11902 | 0.66 | 0.603243 |
Target: 5'- aGGUCGGCGUUGgagCCgGUGCCguccGGGuCc -3' miRNA: 3'- -CCGGUCGCAGUa--GGgUAUGGa---CCCuG- -5' |
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1375 | 5' | -56.9 | NC_001335.1 | + | 16996 | 0.66 | 0.592326 |
Target: 5'- aGGCCGGCGUgAgCgCCGUGacgaUGGGAg -3' miRNA: 3'- -CCGGUCGCAgUaG-GGUAUgg--ACCCUg -5' |
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1375 | 5' | -56.9 | NC_001335.1 | + | 42664 | 0.66 | 0.592326 |
Target: 5'- cGGCCGGCcacuUCAUCCCGcagUACCa-GGAa -3' miRNA: 3'- -CCGGUCGc---AGUAGGGU---AUGGacCCUg -5' |
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1375 | 5' | -56.9 | NC_001335.1 | + | 23104 | 0.66 | 0.582528 |
Target: 5'- uGGCCacauggucggacgacGGCGUCGUCuCCGcgaugggugcgaacUACCgccgcUGGGGCu -3' miRNA: 3'- -CCGG---------------UCGCAGUAG-GGU--------------AUGG-----ACCCUG- -5' |
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1375 | 5' | -56.9 | NC_001335.1 | + | 41742 | 0.67 | 0.559806 |
Target: 5'- cGCUGGUGUgGUCCCcgACguaUGGGAa -3' miRNA: 3'- cCGGUCGCAgUAGGGuaUGg--ACCCUg -5' |
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1375 | 5' | -56.9 | NC_001335.1 | + | 44375 | 0.68 | 0.486256 |
Target: 5'- cGGaUCAGgagauCGUCAUCCUcgAUGCCUcggGGGACg -3' miRNA: 3'- -CC-GGUC-----GCAGUAGGG--UAUGGA---CCCUG- -5' |
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1375 | 5' | -56.9 | NC_001335.1 | + | 3330 | 0.68 | 0.466069 |
Target: 5'- uGGuCCAGCGgaaGUCCCG-GCCUGuGACc -3' miRNA: 3'- -CC-GGUCGCag-UAGGGUaUGGACcCUG- -5' |
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1375 | 5' | -56.9 | NC_001335.1 | + | 42769 | 0.69 | 0.41761 |
Target: 5'- aGGCCGuGCGUCAUCCCGgACgaGaGAUc -3' miRNA: 3'- -CCGGU-CGCAGUAGGGUaUGgaCcCUG- -5' |
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1375 | 5' | -56.9 | NC_001335.1 | + | 28106 | 1.12 | 0.000387 |
Target: 5'- gGGCCAGCGUCAUCCCAUACCUGGGACg -3' miRNA: 3'- -CCGGUCGCAGUAGGGUAUGGACCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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