miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1376 5' -60.7 NC_001335.1 + 13505 0.66 0.436164
Target:  5'- cGCGCCAa-----CGCAGGgGAUGAGu -3'
miRNA:   3'- aCGCGGUggaaggGCGUCCgCUGCUC- -5'
1376 5' -60.7 NC_001335.1 + 20618 0.66 0.426839
Target:  5'- cGCuCCACCga-CCGCgccgAGcGCGGCGAGc -3'
miRNA:   3'- aCGcGGUGGaagGGCG----UC-CGCUGCUC- -5'
1376 5' -60.7 NC_001335.1 + 35829 0.66 0.40855
Target:  5'- gGuCGaCAUCcUCCCGCuGGCGAUGAa -3'
miRNA:   3'- aC-GCgGUGGaAGGGCGuCCGCUGCUc -5'
1376 5' -60.7 NC_001335.1 + 25629 0.67 0.37348
Target:  5'- gGCGaaaaCACCcUCUgaccagcggaGCGGGCGACGGGa -3'
miRNA:   3'- aCGCg---GUGGaAGGg---------CGUCCGCUGCUC- -5'
1376 5' -60.7 NC_001335.1 + 24715 0.67 0.37348
Target:  5'- gUGCGCCgugGCgCUUCCCGCGuGGgGAacaaGAu -3'
miRNA:   3'- -ACGCGG---UG-GAAGGGCGU-CCgCUg---CUc -5'
1376 5' -60.7 NC_001335.1 + 25277 0.67 0.34051
Target:  5'- gGaCGCCgaaGCCUggCUCGCGGGCGAgaagcggcucauCGAGa -3'
miRNA:   3'- aC-GCGG---UGGAa-GGGCGUCCGCU------------GCUC- -5'
1376 5' -60.7 NC_001335.1 + 41039 0.67 0.339713
Target:  5'- -aCGUCACCggCCCGCAcaacgacGGCGACa-- -3'
miRNA:   3'- acGCGGUGGaaGGGCGU-------CCGCUGcuc -5'
1376 5' -60.7 NC_001335.1 + 32570 0.68 0.302336
Target:  5'- gGCGCUuCCUgagcugCCUGCGGGgCG-CGAGa -3'
miRNA:   3'- aCGCGGuGGAa-----GGGCGUCC-GCuGCUC- -5'
1376 5' -60.7 NC_001335.1 + 25999 0.68 0.302336
Target:  5'- aGgGCCACUguggcgaCCGU-GGCGACGAGc -3'
miRNA:   3'- aCgCGGUGGaag----GGCGuCCGCUGCUC- -5'
1376 5' -60.7 NC_001335.1 + 24439 0.69 0.287314
Target:  5'- gGCGCUACgUUCgCCGCucaggcaGGuGCGACGAc -3'
miRNA:   3'- aCGCGGUGgAAG-GGCG-------UC-CGCUGCUc -5'
1376 5' -60.7 NC_001335.1 + 38588 0.69 0.267545
Target:  5'- cUGUGCC-CCUUCCac--GGCGACGAa -3'
miRNA:   3'- -ACGCGGuGGAAGGgcguCCGCUGCUc -5'
1376 5' -60.7 NC_001335.1 + 26356 0.69 0.260987
Target:  5'- cGgGCaACCacaUUCCGCAGGUGAUGAGc -3'
miRNA:   3'- aCgCGgUGGa--AGGGCGUCCGCUGCUC- -5'
1376 5' -60.7 NC_001335.1 + 17667 0.69 0.252658
Target:  5'- cUGCGCUgACCaUCCCGCcgaugccguugaucAGGCccugGACGAGa -3'
miRNA:   3'- -ACGCGG-UGGaAGGGCG--------------UCCG----CUGCUC- -5'
1376 5' -60.7 NC_001335.1 + 33136 0.7 0.230149
Target:  5'- aGU-CCAgCUUCCCGCAGGCuccguACGAGc -3'
miRNA:   3'- aCGcGGUgGAAGGGCGUCCGc----UGCUC- -5'
1376 5' -60.7 NC_001335.1 + 19447 0.71 0.202444
Target:  5'- cUGCGCgGCCUggUCGCuGGCGAgCGGGu -3'
miRNA:   3'- -ACGCGgUGGAagGGCGuCCGCU-GCUC- -5'
1376 5' -60.7 NC_001335.1 + 1229 0.71 0.182408
Target:  5'- aGCGCCgguACCggaggcgUCaCCGguGGCGGCGGa -3'
miRNA:   3'- aCGCGG---UGGa------AG-GGCguCCGCUGCUc -5'
1376 5' -60.7 NC_001335.1 + 28653 1.09 0.000284
Target:  5'- gUGCGCCACCUUCCCGCAGGCGACGAGg -3'
miRNA:   3'- -ACGCGGUGGAAGGGCGUCCGCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.