Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 2126 | 0.7 | 0.617158 |
Target: 5'- uGUCG-AGGUGGCcccuCGGGCguucGUCGCa -3' miRNA: 3'- -CAGCuUCUACCGuu--GCUCGaa--CGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 18690 | 0.7 | 0.605859 |
Target: 5'- aGUCcGGGGUGGUGACguaGAGCUUGCagguGCg -3' miRNA: 3'- -CAGcUUCUACCGUUG---CUCGAACGg---CG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 16979 | 0.7 | 0.605859 |
Target: 5'- -gUGAcGAUGGgAGCGAGCUgugUGCCcaGCg -3' miRNA: 3'- caGCUuCUACCgUUGCUCGA---ACGG--CG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 11838 | 0.7 | 0.605859 |
Target: 5'- --gGAAGGUcGGgAACGGGCUgucggUGCCGUu -3' miRNA: 3'- cagCUUCUA-CCgUUGCUCGA-----ACGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 42722 | 0.7 | 0.594585 |
Target: 5'- gGUCGGAGAUGG-AACGGGCaggaguucgUGaCGCg -3' miRNA: 3'- -CAGCUUCUACCgUUGCUCGa--------ACgGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 42260 | 0.7 | 0.594585 |
Target: 5'- gGUCGAGGAUuGCGACGAuCUgGUCGUa -3' miRNA: 3'- -CAGCUUCUAcCGUUGCUcGAaCGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 4831 | 0.7 | 0.583345 |
Target: 5'- -cCGAGGcgGGcCAGCGGcCUUGCCGa -3' miRNA: 3'- caGCUUCuaCC-GUUGCUcGAACGGCg -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 24219 | 0.71 | 0.561001 |
Target: 5'- -gCGAAGAaccacgccUGGCcGCGAGCgccagcaccGCCGCu -3' miRNA: 3'- caGCUUCU--------ACCGuUGCUCGaa-------CGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 38755 | 0.71 | 0.517101 |
Target: 5'- -gCGGAGAccGGCGA-GGGCUUcGCCGCc -3' miRNA: 3'- caGCUUCUa-CCGUUgCUCGAA-CGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 13677 | 0.72 | 0.506335 |
Target: 5'- cGUCGGugaugcGGGUGGU--CGAGUUcUGCCGCg -3' miRNA: 3'- -CAGCU------UCUACCGuuGCUCGA-ACGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 24781 | 0.72 | 0.495666 |
Target: 5'- uUCGGAGA--GCugauCGAGCUUcGCCGCa -3' miRNA: 3'- cAGCUUCUacCGuu--GCUCGAA-CGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 45506 | 0.72 | 0.485099 |
Target: 5'- aGUgGAAGAcgUGGCAugACGAGCccgcGCCGUu -3' miRNA: 3'- -CAgCUUCU--ACCGU--UGCUCGaa--CGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 29061 | 0.73 | 0.454072 |
Target: 5'- --aGAAGcUGGCGAUGgaAGCUgGCCGCa -3' miRNA: 3'- cagCUUCuACCGUUGC--UCGAaCGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 25987 | 0.76 | 0.301483 |
Target: 5'- -gCGAccGUGGCGACGAGCgucagGCCGUc -3' miRNA: 3'- caGCUucUACCGUUGCUCGaa---CGGCG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 12897 | 0.77 | 0.244615 |
Target: 5'- aUCGAGGAUGGU---GAGCUUGCCuuGCg -3' miRNA: 3'- cAGCUUCUACCGuugCUCGAACGG--CG- -5' |
|||||||
1377 | 5' | -52.6 | NC_001335.1 | + | 29581 | 1.11 | 0.001211 |
Target: 5'- gGUCGAAGAUGGCAACGAGCUUGCCGCc -3' miRNA: 3'- -CAGCUUCUACCGUUGCUCGAACGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home