Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1378 | 5' | -54.8 | NC_001335.1 | + | 30221 | 1.14 | 0.00049 |
Target: 5'- uGCUCCAGAACGCCUCCUUCGACCUCCa -3' miRNA: 3'- -CGAGGUCUUGCGGAGGAAGCUGGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 1203 | 0.77 | 0.19504 |
Target: 5'- gGCUCCA--GCGCCUCUgcgguugCGugCUCCg -3' miRNA: 3'- -CGAGGUcuUGCGGAGGaa-----GCugGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 37225 | 0.77 | 0.203544 |
Target: 5'- uCUCCAGAACGCCUgCguaaccggcgaugUCGACCaCCg -3' miRNA: 3'- cGAGGUCUUGCGGAgGa------------AGCUGGaGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 1173 | 0.72 | 0.384899 |
Target: 5'- gGUUCCGGGACcgggGCCgCCUUuacuucccCGGCCUCCc -3' miRNA: 3'- -CGAGGUCUUG----CGGaGGAA--------GCUGGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 14334 | 0.72 | 0.403027 |
Target: 5'- uGCUCCu--ACGCCggCCUugcucaagaccaUCGACCUCa -3' miRNA: 3'- -CGAGGucuUGCGGa-GGA------------AGCUGGAGg -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 15088 | 0.7 | 0.48062 |
Target: 5'- aGgaCCGGAGCGUaCUUCUUCuuGACCUCUu -3' miRNA: 3'- -CgaGGUCUUGCG-GAGGAAG--CUGGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 39490 | 0.7 | 0.489809 |
Target: 5'- uCUCCgaaguugaugacgGGAAUGCCggccCUUUCGGCCUCUc -3' miRNA: 3'- cGAGG-------------UCUUGCGGa---GGAAGCUGGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 21995 | 0.7 | 0.501148 |
Target: 5'- aGCUCCAGu-CGCCcCCacCGAUCUCg -3' miRNA: 3'- -CGAGGUCuuGCGGaGGaaGCUGGAGg -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 27278 | 0.7 | 0.501148 |
Target: 5'- uUUCCAGGuACGCCUCggcgaggUUGGCCUCg -3' miRNA: 3'- cGAGGUCU-UGCGGAGga-----AGCUGGAGg -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 5811 | 0.69 | 0.564795 |
Target: 5'- uCUCCA--GCGCCUgCUU-GACCUUCg -3' miRNA: 3'- cGAGGUcuUGCGGAgGAAgCUGGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 10908 | 0.69 | 0.564795 |
Target: 5'- gGUUCCAu--CGgCUUC-UCGACCUCCg -3' miRNA: 3'- -CGAGGUcuuGCgGAGGaAGCUGGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 29240 | 0.69 | 0.575635 |
Target: 5'- aGCgccgCCAGGACGCgaagCUCCUgcgccugguagUCGACUgaggCCa -3' miRNA: 3'- -CGa---GGUCUUGCG----GAGGA-----------AGCUGGa---GG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 11046 | 0.68 | 0.619372 |
Target: 5'- cGCUCagcGAGCuugGCCUCgUacUCGGCCUUCa -3' miRNA: 3'- -CGAGgu-CUUG---CGGAGgA--AGCUGGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 804 | 0.68 | 0.641344 |
Target: 5'- cGUUCCAuagcuGCGCCgCCUUCGGCauguucgUCCa -3' miRNA: 3'- -CGAGGUcu---UGCGGaGGAAGCUGg------AGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 31013 | 0.68 | 0.652322 |
Target: 5'- cGC-CCAGGuACGCCuggcggaugUCCUU-GACCUCg -3' miRNA: 3'- -CGaGGUCU-UGCGG---------AGGAAgCUGGAGg -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 18925 | 0.67 | 0.663282 |
Target: 5'- -aUCCGcAGCGUCUCCUUgGGcaguuCCUCCc -3' miRNA: 3'- cgAGGUcUUGCGGAGGAAgCU-----GGAGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 48879 | 0.67 | 0.663282 |
Target: 5'- cGCgUCCGGucgcCGCgUCCUgcUCGACCaCCu -3' miRNA: 3'- -CG-AGGUCuu--GCGgAGGA--AGCUGGaGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 19846 | 0.67 | 0.674213 |
Target: 5'- aGCUUguGGACGCUgCCUgaUGACC-CCa -3' miRNA: 3'- -CGAGguCUUGCGGaGGAa-GCUGGaGG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 3538 | 0.67 | 0.695944 |
Target: 5'- uGCgUCCAGAGCGUCUUggaugUCG-CCUgCCa -3' miRNA: 3'- -CG-AGGUCUUGCGGAGga---AGCuGGA-GG- -5' |
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1378 | 5' | -54.8 | NC_001335.1 | + | 18021 | 0.67 | 0.706723 |
Target: 5'- gGUUCUgcAGCGCCUC--UCGGCCUgCCu -3' miRNA: 3'- -CGAGGucUUGCGGAGgaAGCUGGA-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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