Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1378 | 5' | -54.8 | NC_001335.1 | + | 5811 | 0.69 | 0.564795 |
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Target: 5'- uCUCCA--GCGCCUgCUU-GACCUUCg -3' miRNA: 3'- cGAGGUcuUGCGGAgGAAgCUGGAGG- -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 21995 | 0.7 | 0.501148 |
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Target: 5'- aGCUCCAGu-CGCCcCCacCGAUCUCg -3' miRNA: 3'- -CGAGGUCuuGCGGaGGaaGCUGGAGg -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 27278 | 0.7 | 0.501148 |
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Target: 5'- uUUCCAGGuACGCCUCggcgaggUUGGCCUCg -3' miRNA: 3'- cGAGGUCU-UGCGGAGga-----AGCUGGAGg -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 39490 | 0.7 | 0.489809 |
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Target: 5'- uCUCCgaaguugaugacgGGAAUGCCggccCUUUCGGCCUCUc -3' miRNA: 3'- cGAGG-------------UCUUGCGGa---GGAAGCUGGAGG- -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 15088 | 0.7 | 0.48062 |
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Target: 5'- aGgaCCGGAGCGUaCUUCUUCuuGACCUCUu -3' miRNA: 3'- -CgaGGUCUUGCG-GAGGAAG--CUGGAGG- -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 14334 | 0.72 | 0.403027 |
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Target: 5'- uGCUCCu--ACGCCggCCUugcucaagaccaUCGACCUCa -3' miRNA: 3'- -CGAGGucuUGCGGa-GGA------------AGCUGGAGg -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 1173 | 0.72 | 0.384899 |
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Target: 5'- gGUUCCGGGACcgggGCCgCCUUuacuucccCGGCCUCCc -3' miRNA: 3'- -CGAGGUCUUG----CGGaGGAA--------GCUGGAGG- -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 37225 | 0.77 | 0.203544 |
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Target: 5'- uCUCCAGAACGCCUgCguaaccggcgaugUCGACCaCCg -3' miRNA: 3'- cGAGGUCUUGCGGAgGa------------AGCUGGaGG- -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 1203 | 0.77 | 0.19504 |
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Target: 5'- gGCUCCA--GCGCCUCUgcgguugCGugCUCCg -3' miRNA: 3'- -CGAGGUcuUGCGGAGGaa-----GCugGAGG- -5' |
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| 1378 | 5' | -54.8 | NC_001335.1 | + | 30221 | 1.14 | 0.00049 |
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Target: 5'- uGCUCCAGAACGCCUCCUUCGACCUCCa -3' miRNA: 3'- -CGAGGUCUUGCGGAGGAAGCUGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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