Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1379 | 3' | -56.6 | NC_001335.1 | + | 9866 | 0.66 | 0.645971 |
Target: 5'- uUCGGCGGUgccguggggcucgGGgAGCCugggaccgucGGGUCggCGUCg -3' miRNA: 3'- -AGCCGCCG-------------UUgUCGG----------CCUAGuaGCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 35657 | 0.66 | 0.640492 |
Target: 5'- aCGGCuGGCGuggagaaggacgacaAgGGCaaGGUCAUCGUCa -3' miRNA: 3'- aGCCG-CCGU---------------UgUCGgcCUAGUAGCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 343 | 0.66 | 0.636107 |
Target: 5'- uUCGaucCGGCAACcGCCGGAUC-UCa-- -3' miRNA: 3'- -AGCc--GCCGUUGuCGGCCUAGuAGcag -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 4834 | 0.66 | 0.614185 |
Target: 5'- -aGGCGGgcCAGCGGCCuugccGAUCAagccggugaugcUCGUCg -3' miRNA: 3'- agCCGCC--GUUGUCGGc----CUAGU------------AGCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 5484 | 0.66 | 0.592326 |
Target: 5'- cUCGGCaccgccgccccGGC-ACuGCUGGG-CAUCGUCc -3' miRNA: 3'- -AGCCG-----------CCGuUGuCGGCCUaGUAGCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 45243 | 0.66 | 0.589056 |
Target: 5'- uUCGaGCuGGCAAgGGCCGGAUucaaggcgaagguaCAUCuUCg -3' miRNA: 3'- -AGC-CG-CCGUUgUCGGCCUA--------------GUAGcAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 12970 | 0.67 | 0.581441 |
Target: 5'- cUCaGCGGUuAC-GCCGGAUCGg-GUCa -3' miRNA: 3'- -AGcCGCCGuUGuCGGCCUAGUagCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 26691 | 0.67 | 0.581441 |
Target: 5'- cUCGGgGGCAuCAGCgCGGuccuccgugcuUCAUCGg- -3' miRNA: 3'- -AGCCgCCGUuGUCG-GCCu----------AGUAGCag -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 18888 | 0.67 | 0.581441 |
Target: 5'- aCGGCGGCGucCAGaacgaCGGGUCGaaccgggUGUCg -3' miRNA: 3'- aGCCGCCGUu-GUCg----GCCUAGUa------GCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 10214 | 0.67 | 0.581441 |
Target: 5'- gUGGagauGGCAGCAcGCCGacaGAUCAUCGg- -3' miRNA: 3'- aGCCg---CCGUUGU-CGGC---CUAGUAGCag -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 32701 | 0.67 | 0.57493 |
Target: 5'- cUCGGCGGUguuGACcuuggccagcacgucGGCCGGGUCcgCa-- -3' miRNA: 3'- -AGCCGCCG---UUG---------------UCGGCCUAGuaGcag -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 21539 | 0.67 | 0.570599 |
Target: 5'- cCGGCccaGCGAUAGCCGaGGUCGUgGa- -3' miRNA: 3'- aGCCGc--CGUUGUCGGC-CUAGUAgCag -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 45606 | 0.67 | 0.564117 |
Target: 5'- cUCGGCGGuCuccuccuaguuggguAGCAGUCGGuuguacUCGUCGUg -3' miRNA: 3'- -AGCCGCC-G---------------UUGUCGGCCu-----AGUAGCAg -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 44344 | 0.67 | 0.548001 |
Target: 5'- cUCGGCGGUGAgguUGGugugcucguucacCCGGAUCAggagaUCGUCa -3' miRNA: 3'- -AGCCGCCGUU---GUC-------------GGCCUAGU-----AGCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 46260 | 0.67 | 0.548001 |
Target: 5'- gCGGUgguucuaGGCAACcuGCCugGGAUCAUCGcCg -3' miRNA: 3'- aGCCG-------CCGUUGu-CGG--CCUAGUAGCaG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 3058 | 0.67 | 0.538401 |
Target: 5'- uUCGGuCaGCAGCAGCgCGGAgagCAUCu-- -3' miRNA: 3'- -AGCC-GcCGUUGUCG-GCCUa--GUAGcag -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 32833 | 0.68 | 0.527803 |
Target: 5'- gUCGcGCa-CAGCAGCCGaGGcCGUCGUCa -3' miRNA: 3'- -AGC-CGccGUUGUCGGC-CUaGUAGCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 20208 | 0.68 | 0.527803 |
Target: 5'- uUCGGCGGUucguGGCuGaCCGGGU--UCGUCc -3' miRNA: 3'- -AGCCGCCG----UUGuC-GGCCUAguAGCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 38676 | 0.68 | 0.496504 |
Target: 5'- aCGGCGGCGAagcccucGCCGG-UCuccgcugCGUCg -3' miRNA: 3'- aGCCGCCGUUgu-----CGGCCuAGua-----GCAG- -5' |
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1379 | 3' | -56.6 | NC_001335.1 | + | 25898 | 0.69 | 0.446326 |
Target: 5'- cUUGGUGGuCGACGGCCuGAcgcUCGUCGcCa -3' miRNA: 3'- -AGCCGCC-GUUGUCGGcCU---AGUAGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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