miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1380 3' -57.7 NC_001335.1 + 9867 0.66 0.510554
Target:  5'- cUUCGGC--GGUGCcguggGGCUCGGGg-- -3'
miRNA:   3'- cAAGCCGuuCCGCGa----CCGAGUCCagu -5'
1380 3' -57.7 NC_001335.1 + 16250 0.66 0.500111
Target:  5'- cGUUCGGagccGGCGCUGGCgua-GUCGc -3'
miRNA:   3'- -CAAGCCguu-CCGCGACCGagucCAGU- -5'
1380 3' -57.7 NC_001335.1 + 2183 0.67 0.489763
Target:  5'- -gUCGGCcacgaaguGGGGCGgUGGCgaGGGUCu -3'
miRNA:   3'- caAGCCG--------UUCCGCgACCGagUCCAGu -5'
1380 3' -57.7 NC_001335.1 + 7307 0.67 0.488734
Target:  5'- --aCGGCAAGGUcaaugaaggccacGCgaUGGCagAGGUCAu -3'
miRNA:   3'- caaGCCGUUCCG-------------CG--ACCGagUCCAGU- -5'
1380 3' -57.7 NC_001335.1 + 50763 0.67 0.449431
Target:  5'- gGggCGGCGcaccuuGGGCGCguUGGCUCGcGGUg- -3'
miRNA:   3'- -CaaGCCGU------UCCGCG--ACCGAGU-CCAgu -5'
1380 3' -57.7 NC_001335.1 + 19451 0.68 0.38355
Target:  5'- --gCGGCcuGGuCGCUGGCgagCGGGUg- -3'
miRNA:   3'- caaGCCGuuCC-GCGACCGa--GUCCAgu -5'
1380 3' -57.7 NC_001335.1 + 46119 0.68 0.38355
Target:  5'- -cUCGGCGAuGuGCGCUGcGCUCcGGUa- -3'
miRNA:   3'- caAGCCGUU-C-CGCGAC-CGAGuCCAgu -5'
1380 3' -57.7 NC_001335.1 + 3163 0.69 0.340585
Target:  5'- -cUUGGCGAGGCGCU-GCUUGagcacgucGGUCAc -3'
miRNA:   3'- caAGCCGUUCCGCGAcCGAGU--------CCAGU- -5'
1380 3' -57.7 NC_001335.1 + 24092 0.7 0.301214
Target:  5'- --gCGGCGGcGGgGCUGGUgccCAGGUCu -3'
miRNA:   3'- caaGCCGUU-CCgCGACCGa--GUCCAGu -5'
1380 3' -57.7 NC_001335.1 + 17312 0.71 0.258721
Target:  5'- gGUUCuGCcccuGGCGCaGGCUCuGGUCAg -3'
miRNA:   3'- -CAAGcCGuu--CCGCGaCCGAGuCCAGU- -5'
1380 3' -57.7 NC_001335.1 + 2319 0.74 0.183485
Target:  5'- -gUCGGCAAGGagugaGCUgggccGGCUCAGGcCGg -3'
miRNA:   3'- caAGCCGUUCCg----CGA-----CCGAGUCCaGU- -5'
1380 3' -57.7 NC_001335.1 + 4908 0.77 0.102349
Target:  5'- -aUCGGCAAGGcCGCUGGCccgccUCGGGgCAu -3'
miRNA:   3'- caAGCCGUUCC-GCGACCG-----AGUCCaGU- -5'
1380 3' -57.7 NC_001335.1 + 31175 1.08 0.000518
Target:  5'- uGUUCGGCAAGGCGCUGGCUCAGGUCAa -3'
miRNA:   3'- -CAAGCCGUUCCGCGACCGAGUCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.