miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1382 3' -53.8 NC_001335.1 + 39084 0.66 0.798061
Target:  5'- uGCGAGCcGUCCUGaacucUCGGugAUGAg-- -3'
miRNA:   3'- -CGCUCGaCAGGAC-----GGCUugUACUgcu -5'
1382 3' -53.8 NC_001335.1 + 32578 0.66 0.788194
Target:  5'- cUGAGCUG-CCUGCgGGGC---GCGAg -3'
miRNA:   3'- cGCUCGACaGGACGgCUUGuacUGCU- -5'
1382 3' -53.8 NC_001335.1 + 6377 0.67 0.725904
Target:  5'- aCGAGgUGgCCauugGCCGAAuCGUGAUGAg -3'
miRNA:   3'- cGCUCgACaGGa---CGGCUU-GUACUGCU- -5'
1382 3' -53.8 NC_001335.1 + 25693 0.67 0.704248
Target:  5'- -aGAGCcccccgCCUGCgCGAACA-GACGAg -3'
miRNA:   3'- cgCUCGaca---GGACG-GCUUGUaCUGCU- -5'
1382 3' -53.8 NC_001335.1 + 41329 0.68 0.693307
Target:  5'- cGCGGGCUGUCgCgaGCaGAACAUcGAgGAc -3'
miRNA:   3'- -CGCUCGACAG-Ga-CGgCUUGUA-CUgCU- -5'
1382 3' -53.8 NC_001335.1 + 40856 0.68 0.682304
Target:  5'- uUGAGCaUGUCCggGCCGAACccGucCGAu -3'
miRNA:   3'- cGCUCG-ACAGGa-CGGCUUGuaCu-GCU- -5'
1382 3' -53.8 NC_001335.1 + 6756 0.68 0.682304
Target:  5'- cCGAGUacgUGaauaccCCUGgCGGGCAUGACGAu -3'
miRNA:   3'- cGCUCG---ACa-----GGACgGCUUGUACUGCU- -5'
1382 3' -53.8 NC_001335.1 + 2602 0.68 0.671253
Target:  5'- gGCG-GCUGauuUCUUGCCGugacaGACAUGGCa- -3'
miRNA:   3'- -CGCuCGAC---AGGACGGC-----UUGUACUGcu -5'
1382 3' -53.8 NC_001335.1 + 12134 0.68 0.671253
Target:  5'- gGCGGcCUGUCCU-UCGA-CGUGACGGa -3'
miRNA:   3'- -CGCUcGACAGGAcGGCUuGUACUGCU- -5'
1382 3' -53.8 NC_001335.1 + 42691 0.69 0.615648
Target:  5'- cGCGAGagguaUCgaGCCGAACAUGAaCGGc -3'
miRNA:   3'- -CGCUCgac--AGgaCGGCUUGUACU-GCU- -5'
1382 3' -53.8 NC_001335.1 + 38356 0.7 0.538646
Target:  5'- cGCGGGCUGgCCgGCCGAGCGgaACu- -3'
miRNA:   3'- -CGCUCGACaGGaCGGCUUGUacUGcu -5'
1382 3' -53.8 NC_001335.1 + 28932 0.71 0.475386
Target:  5'- cGCGAGCUGUCaccggcagccGCCGGcccaucGCGUuGACGAu -3'
miRNA:   3'- -CGCUCGACAGga--------CGGCU------UGUA-CUGCU- -5'
1382 3' -53.8 NC_001335.1 + 8835 0.72 0.425627
Target:  5'- uGCGGGuCUGgCUUGCUGAuCGUGAUGAa -3'
miRNA:   3'- -CGCUC-GACaGGACGGCUuGUACUGCU- -5'
1382 3' -53.8 NC_001335.1 + 31829 1.12 0.000877
Target:  5'- cGCGAGCUGUCCUGCCGAACAUGACGAa -3'
miRNA:   3'- -CGCUCGACAGGACGGCUUGUACUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.