miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1382 5' -57.7 NC_001335.1 + 23285 0.66 0.620338
Target:  5'- -aUCGUCAcuCGGGUGACCGaguUCGGaGUGc -3'
miRNA:   3'- ccAGCAGU--GCCCGUUGGU---AGCC-CGCa -5'
1382 5' -57.7 NC_001335.1 + 49935 0.66 0.592418
Target:  5'- gGGUUGUCGCGGaugacucgaccccaaGCGGCCAcauaggUgGGGCu- -3'
miRNA:   3'- -CCAGCAGUGCC---------------CGUUGGU------AgCCCGca -5'
1382 5' -57.7 NC_001335.1 + 12988 0.66 0.588138
Target:  5'- cGGUCGcUCGCGcucacgucGGCAucACCAcguUCGGGaCGa -3'
miRNA:   3'- -CCAGC-AGUGC--------CCGU--UGGU---AGCCC-GCa -5'
1382 5' -57.7 NC_001335.1 + 28073 0.67 0.524889
Target:  5'- uGUUGUC-CGGGCAGuCCucggggacguuGUCGgGGCGUu -3'
miRNA:   3'- cCAGCAGuGCCCGUU-GG-----------UAGC-CCGCA- -5'
1382 5' -57.7 NC_001335.1 + 50751 0.68 0.49422
Target:  5'- aGUCGUCGgccggGGGCGGCgCAccUUGGGCGc -3'
miRNA:   3'- cCAGCAGUg----CCCGUUG-GU--AGCCCGCa -5'
1382 5' -57.7 NC_001335.1 + 15737 0.68 0.474234
Target:  5'- aGGUCGUCgggacGCGGGUAugacuuggguGCC-UUGGGCu- -3'
miRNA:   3'- -CCAGCAG-----UGCCCGU----------UGGuAGCCCGca -5'
1382 5' -57.7 NC_001335.1 + 24272 0.68 0.454661
Target:  5'- -cUCGUCGCGGGCcucagacGCCAUCuGGUa- -3'
miRNA:   3'- ccAGCAGUGCCCGu------UGGUAGcCCGca -5'
1382 5' -57.7 NC_001335.1 + 2650 0.68 0.44504
Target:  5'- uGGUCGcuuccUC-CGGGCucuaaguucccGCCGUCGGGCu- -3'
miRNA:   3'- -CCAGC-----AGuGCCCGu----------UGGUAGCCCGca -5'
1382 5' -57.7 NC_001335.1 + 49245 0.68 0.44504
Target:  5'- aGUCGUCGCGGaGCcuuuGACCG-CuGGCGUu -3'
miRNA:   3'- cCAGCAGUGCC-CG----UUGGUaGcCCGCA- -5'
1382 5' -57.7 NC_001335.1 + 11835 0.7 0.389835
Target:  5'- aGGUCGggaACGGGCugucgguGCCGuugaUCGcGGCGUu -3'
miRNA:   3'- -CCAGCag-UGCCCGu------UGGU----AGC-CCGCA- -5'
1382 5' -57.7 NC_001335.1 + 41707 0.71 0.331361
Target:  5'- -aUCGUCACGGaGCcuCCAcUGGGUGUg -3'
miRNA:   3'- ccAGCAGUGCC-CGuuGGUaGCCCGCA- -5'
1382 5' -57.7 NC_001335.1 + 7693 0.72 0.266042
Target:  5'- uGUCGUCuAUcGGCAGCCAgguggagucgccUCGGGCGa -3'
miRNA:   3'- cCAGCAG-UGcCCGUUGGU------------AGCCCGCa -5'
1382 5' -57.7 NC_001335.1 + 14779 0.73 0.240529
Target:  5'- cGUCGUCGCGGcgaacucCAGCCuugUGGGCGUg -3'
miRNA:   3'- cCAGCAGUGCCc------GUUGGua-GCCCGCA- -5'
1382 5' -57.7 NC_001335.1 + 28950 0.78 0.108053
Target:  5'- cGUCGUCGCGGGacguGACCuGUCGGGCu- -3'
miRNA:   3'- cCAGCAGUGCCCg---UUGG-UAGCCCGca -5'
1382 5' -57.7 NC_001335.1 + 31793 1.09 0.000589
Target:  5'- uGGUCGUCACGGGCAACCAUCGGGCGUg -3'
miRNA:   3'- -CCAGCAGUGCCCGUUGGUAGCCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.