miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1384 3' -55.7 NC_001335.1 + 6738 0.66 0.688247
Target:  5'- --uGCCag-GACGGGCCGaugaugugaGGGGGAGa -3'
miRNA:   3'- cuuCGGccaUUGCUCGGU---------UCCCCUCg -5'
1384 3' -55.7 NC_001335.1 + 40974 0.66 0.666293
Target:  5'- cGGGCCGGUGACGu-----GGuGGAGCc -3'
miRNA:   3'- cUUCGGCCAUUGCucgguuCC-CCUCG- -5'
1384 3' -55.7 NC_001335.1 + 5853 0.66 0.633146
Target:  5'- -uGGCC---AGCGGGCCGagcuGGGGGAGa -3'
miRNA:   3'- cuUCGGccaUUGCUCGGU----UCCCCUCg -5'
1384 3' -55.7 NC_001335.1 + 31919 0.67 0.622081
Target:  5'- aGAGCCGGgggcagAugGuGCCAAGGucGGUc -3'
miRNA:   3'- cUUCGGCCa-----UugCuCGGUUCCccUCG- -5'
1384 3' -55.7 NC_001335.1 + 18876 0.67 0.622081
Target:  5'- aAGGUCGGccGCGAGC--AGGGuGGGCu -3'
miRNA:   3'- cUUCGGCCauUGCUCGguUCCC-CUCG- -5'
1384 3' -55.7 NC_001335.1 + 16711 0.67 0.611025
Target:  5'- uGAAGCCGuUggUGAacuCCugcAGGGGAGCc -3'
miRNA:   3'- -CUUCGGCcAuuGCUc--GGu--UCCCCUCG- -5'
1384 3' -55.7 NC_001335.1 + 33561 0.68 0.545391
Target:  5'- cAGGCaCGGUGGCGAagauGCCAggagucuccgAGGGGAu- -3'
miRNA:   3'- cUUCG-GCCAUUGCU----CGGU----------UCCCCUcg -5'
1384 3' -55.7 NC_001335.1 + 20768 0.68 0.545391
Target:  5'- -cAGuCCGGUGACGAuguccucgaGCCcgGAGaucGGGAGCg -3'
miRNA:   3'- cuUC-GGCCAUUGCU---------CGG--UUC---CCCUCG- -5'
1384 3' -55.7 NC_001335.1 + 25853 0.68 0.523977
Target:  5'- cGAGCUGGcuGCG-GCCAAcGGGGuGGCc -3'
miRNA:   3'- cUUCGGCCauUGCuCGGUU-CCCC-UCG- -5'
1384 3' -55.7 NC_001335.1 + 19547 0.68 0.523977
Target:  5'- cGAAGUgGGUGAUGGaCCAccGGGGucGAGCa -3'
miRNA:   3'- -CUUCGgCCAUUGCUcGGU--UCCC--CUCG- -5'
1384 3' -55.7 NC_001335.1 + 10964 0.68 0.513391
Target:  5'- aAGGCCGaGU-ACGAGCCAAGcucgcuGAGCg -3'
miRNA:   3'- cUUCGGC-CAuUGCUCGGUUCcc----CUCG- -5'
1384 3' -55.7 NC_001335.1 + 35400 0.7 0.421785
Target:  5'- cGGAGCU-GUAcCGGGCCGAGGuguucccGGAGCu -3'
miRNA:   3'- -CUUCGGcCAUuGCUCGGUUCC-------CCUCG- -5'
1384 3' -55.7 NC_001335.1 + 32896 0.71 0.385638
Target:  5'- cGggGCCGGcu-CGGGCUggGcaGGGGCg -3'
miRNA:   3'- -CuuCGGCCauuGCUCGGuuCc-CCUCG- -5'
1384 3' -55.7 NC_001335.1 + 1179 0.71 0.376705
Target:  5'- gGAGGCgGGgGugGAGCUGcaGGGAGCa -3'
miRNA:   3'- -CUUCGgCCaUugCUCGGUucCCCUCG- -5'
1384 3' -55.7 NC_001335.1 + 46489 0.72 0.342391
Target:  5'- aAGGCCGuGgAAUcGGCCGgcGGGGGAGCg -3'
miRNA:   3'- cUUCGGC-CaUUGcUCGGU--UCCCCUCG- -5'
1384 3' -55.7 NC_001335.1 + 36325 0.74 0.259972
Target:  5'- gGAGGCCGGUucucggucGACG-GCCGAGucuGGGAGg -3'
miRNA:   3'- -CUUCGGCCA--------UUGCuCGGUUC---CCCUCg -5'
1384 3' -55.7 NC_001335.1 + 40368 0.74 0.25334
Target:  5'- cAGGCgGGgcGCGcauGCCuGGGGGGGCu -3'
miRNA:   3'- cUUCGgCCauUGCu--CGGuUCCCCUCG- -5'
1384 3' -55.7 NC_001335.1 + 16624 0.74 0.240495
Target:  5'- --uGCCGGUAGCGAGCaCAGGGccGAGg -3'
miRNA:   3'- cuuCGGCCAUUGCUCG-GUUCCc-CUCg -5'
1384 3' -55.7 NC_001335.1 + 32318 0.75 0.205198
Target:  5'- aGAGuuGGUGgaACGAggucaGCCAGGGGGcAGCg -3'
miRNA:   3'- cUUCggCCAU--UGCU-----CGGUUCCCC-UCG- -5'
1384 3' -55.7 NC_001335.1 + 20402 0.77 0.165183
Target:  5'- cGGGCUGGUGcccAUGAaCCAGGGGGAGUa -3'
miRNA:   3'- cUUCGGCCAU---UGCUcGGUUCCCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.