miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1384 5' -60.1 NC_001335.1 + 50823 0.66 0.449252
Target:  5'- gCGCcGCCCCC-GGCcGACgaCUCGUc- -3'
miRNA:   3'- aGCGaCGGGGGaCCGaCUG--GAGCAag -5'
1384 5' -60.1 NC_001335.1 + 14735 0.66 0.411661
Target:  5'- -aGCUGCCCaucgaugaCCUGGCUGcgcuGCC-CGUcCg -3'
miRNA:   3'- agCGACGGG--------GGACCGAC----UGGaGCAaG- -5'
1384 5' -60.1 NC_001335.1 + 8305 0.66 0.411661
Target:  5'- aCGCUGCagUCUGcGCUGuCCUCGcgUUCg -3'
miRNA:   3'- aGCGACGggGGAC-CGACuGGAGC--AAG- -5'
1384 5' -60.1 NC_001335.1 + 14330 0.66 0.402572
Target:  5'- cCGCUGCUCCUacGCcGGCCUUGcUCa -3'
miRNA:   3'- aGCGACGGGGGacCGaCUGGAGCaAG- -5'
1384 5' -60.1 NC_001335.1 + 46408 0.67 0.359088
Target:  5'- aCGCU-CCCCCgccGGCcgauuccacGGCCUUGUUCu -3'
miRNA:   3'- aGCGAcGGGGGa--CCGa--------CUGGAGCAAG- -5'
1384 5' -60.1 NC_001335.1 + 32365 0.67 0.354095
Target:  5'- -aGCU-CCCCUUGGCUcguuaccggcuucucGACCUCGg-- -3'
miRNA:   3'- agCGAcGGGGGACCGA---------------CUGGAGCaag -5'
1384 5' -60.1 NC_001335.1 + 15658 0.68 0.318995
Target:  5'- -gGUUGCCCgCCUGGaUGGCgUCGUa- -3'
miRNA:   3'- agCGACGGG-GGACCgACUGgAGCAag -5'
1384 5' -60.1 NC_001335.1 + 30676 0.7 0.249137
Target:  5'- -aGCUGCCCCCaaagGGCUuggucagccacGACUUCGg-- -3'
miRNA:   3'- agCGACGGGGGa---CCGA-----------CUGGAGCaag -5'
1384 5' -60.1 NC_001335.1 + 20499 0.7 0.23678
Target:  5'- aUCGgUGgCgaCCU-GCUGACCUCGUUCa -3'
miRNA:   3'- -AGCgACgGg-GGAcCGACUGGAGCAAG- -5'
1384 5' -60.1 NC_001335.1 + 26345 0.73 0.143392
Target:  5'- ---aUGCCCCCUgGGCUGGCCUuCGggCu -3'
miRNA:   3'- agcgACGGGGGA-CCGACUGGA-GCaaG- -5'
1384 5' -60.1 NC_001335.1 + 32405 1.08 0.000318
Target:  5'- uUCGCUGCCCCCUGGCUGACCUCGUUCc -3'
miRNA:   3'- -AGCGACGGGGGACCGACUGGAGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.