miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1385 3' -58.8 NC_001335.1 + 44648 0.66 0.51173
Target:  5'- aGGCUUUUCagAGGCUCCGggaucacgGCGAGUa -3'
miRNA:   3'- -UCGAAGGGcgUCCGAGGCa-------UGCUCGc -5'
1385 3' -58.8 NC_001335.1 + 19147 0.66 0.51173
Target:  5'- cGCUUCCgaGuCGGGCUCCccgGUGUGGGCu -3'
miRNA:   3'- uCGAAGGg-C-GUCCGAGG---CAUGCUCGc -5'
1385 3' -58.8 NC_001335.1 + 21273 0.66 0.49132
Target:  5'- cGGCUUUCgGCAcgucgacuGGCUCCGg--GAGCu -3'
miRNA:   3'- -UCGAAGGgCGU--------CCGAGGCaugCUCGc -5'
1385 3' -58.8 NC_001335.1 + 2646 0.66 0.481257
Target:  5'- cGCUUCCUcCGGGCUcuaaguucccgCCGU-CGGGCu -3'
miRNA:   3'- uCGAAGGGcGUCCGA-----------GGCAuGCUCGc -5'
1385 3' -58.8 NC_001335.1 + 38328 0.67 0.451693
Target:  5'- gGGCUUCCgGgCAGGCuuucUCUGUACcGGGaCGu -3'
miRNA:   3'- -UCGAAGGgC-GUCCG----AGGCAUG-CUC-GC- -5'
1385 3' -58.8 NC_001335.1 + 39863 0.68 0.395717
Target:  5'- cGCcUCCCacuGCAGGCcgUCGUGCGAcGUGa -3'
miRNA:   3'- uCGaAGGG---CGUCCGa-GGCAUGCU-CGC- -5'
1385 3' -58.8 NC_001335.1 + 23927 0.68 0.38683
Target:  5'- cAGC-UCCCGCuGcgccuccaGCUCCG-ACGAGCc -3'
miRNA:   3'- -UCGaAGGGCGuC--------CGAGGCaUGCUCGc -5'
1385 3' -58.8 NC_001335.1 + 23958 0.69 0.352626
Target:  5'- cGGCggUCCCGgAGGCUCUGUGauCGAcauccucaGCGu -3'
miRNA:   3'- -UCGa-AGGGCgUCCGAGGCAU--GCU--------CGC- -5'
1385 3' -58.8 NC_001335.1 + 38364 0.7 0.312965
Target:  5'- uGGCgagUCGCGGGCUggCCGgcCGAGCGg -3'
miRNA:   3'- -UCGaagGGCGUCCGA--GGCauGCUCGC- -5'
1385 3' -58.8 NC_001335.1 + 21637 0.7 0.30545
Target:  5'- cGgUUCCCGCAuGGUUcaCCGgACGAGCa -3'
miRNA:   3'- uCgAAGGGCGU-CCGA--GGCaUGCUCGc -5'
1385 3' -58.8 NC_001335.1 + 2344 0.74 0.156057
Target:  5'- cGCUggCCCGCuGGGCUUCG-GCGAGCu -3'
miRNA:   3'- uCGAa-GGGCG-UCCGAGGCaUGCUCGc -5'
1385 3' -58.8 NC_001335.1 + 33132 1.09 0.000433
Target:  5'- cAGCUUCCCGCAGGCUCCGUACGAGCGa -3'
miRNA:   3'- -UCGAAGGGCGUCCGAGGCAUGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.