Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1385 | 5' | -54.6 | NC_001335.1 | + | 47546 | 0.66 | 0.72748 |
Target: 5'- gGGCGGUGGccacauCGGA---GCUGUGGCCa -3' miRNA: 3'- -UCGUCGUCau----GCUUagaCGACGCCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 7865 | 0.66 | 0.724232 |
Target: 5'- uGCAGCGGaGCGAAcuccCUGCcgUGCuuauccagguacuuGGCCa -3' miRNA: 3'- uCGUCGUCaUGCUUa---GACG--ACG--------------CCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 1361 | 0.66 | 0.716621 |
Target: 5'- gGGCaccgGGguGUugGGG-CUGCUGCcaccGCCg -3' miRNA: 3'- -UCG----UCguCAugCUUaGACGACGc---CGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 36840 | 0.66 | 0.716621 |
Target: 5'- aAGCGGCGGUuccUGGAgCcGCUGC-GCCa -3' miRNA: 3'- -UCGUCGUCAu--GCUUaGaCGACGcCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 10000 | 0.66 | 0.716621 |
Target: 5'- -aCGGCGGUAUGcagaUGCUGCcGCCu -3' miRNA: 3'- ucGUCGUCAUGCuuagACGACGcCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 27174 | 0.66 | 0.683572 |
Target: 5'- uGGCGGCaAGgcCGAugauggCUGCUGCgauGGUCu -3' miRNA: 3'- -UCGUCG-UCauGCUua----GACGACG---CCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 3052 | 0.67 | 0.661265 |
Target: 5'- cAGCAGCAGcGCGGAgagcaUCUgGUUGaUGGCa -3' miRNA: 3'- -UCGUCGUCaUGCUU-----AGA-CGAC-GCCGg -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 22929 | 0.67 | 0.627618 |
Target: 5'- uAGcCGGguGUGCGAAcCUccCUGCGGCg -3' miRNA: 3'- -UC-GUCguCAUGCUUaGAc-GACGCCGg -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 25842 | 0.67 | 0.627618 |
Target: 5'- -aCGGCucucaGCGAG-CUgGCUGCGGCCa -3' miRNA: 3'- ucGUCGuca--UGCUUaGA-CGACGCCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 5550 | 0.67 | 0.626496 |
Target: 5'- gGGCGGCGGUGcCGAgcagguagaugGUCUGUcggaucuUGgGGCUc -3' miRNA: 3'- -UCGUCGUCAU-GCU-----------UAGACG-------ACgCCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 48325 | 0.68 | 0.60519 |
Target: 5'- gGGcCAGCAGgACGuggCcGCUGCGGUg -3' miRNA: 3'- -UC-GUCGUCaUGCuuaGaCGACGCCGg -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 47764 | 0.68 | 0.582857 |
Target: 5'- cAGcCAGCaAGgaucGCGGcgUUGCUGCGGUg -3' miRNA: 3'- -UC-GUCG-UCa---UGCUuaGACGACGCCGg -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 34470 | 0.68 | 0.560695 |
Target: 5'- cAGCGGguGUACGAcGUgaGCcGCauccGGCCg -3' miRNA: 3'- -UCGUCguCAUGCU-UAgaCGaCG----CCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 3956 | 0.68 | 0.560695 |
Target: 5'- cGGCuGUAGUAgccgGAAUCgGCUGCaGCCc -3' miRNA: 3'- -UCGuCGUCAUg---CUUAGaCGACGcCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 36484 | 0.69 | 0.538771 |
Target: 5'- cGGCGGCAaccaGAAggUGCUGUGGUCg -3' miRNA: 3'- -UCGUCGUcaugCUUagACGACGCCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 27748 | 0.69 | 0.49588 |
Target: 5'- uGCGGCuGcUGCac--CUGCUGCGGCUg -3' miRNA: 3'- uCGUCGuC-AUGcuuaGACGACGCCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 39927 | 0.7 | 0.444573 |
Target: 5'- uGCAGUGGgagGCG-AUCUGaUGCGGCg -3' miRNA: 3'- uCGUCGUCa--UGCuUAGACgACGCCGg -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 43770 | 0.7 | 0.443577 |
Target: 5'- cAGCGGCAGcaaugucUugGuGUCUGUcacgcaGCGGCCa -3' miRNA: 3'- -UCGUCGUC-------AugCuUAGACGa-----CGCCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 29150 | 0.72 | 0.378066 |
Target: 5'- cGCugaGGCAGUGgGGAUCUcgauccCUGUGGCCa -3' miRNA: 3'- uCG---UCGUCAUgCUUAGAc-----GACGCCGG- -5' |
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1385 | 5' | -54.6 | NC_001335.1 | + | 4113 | 0.73 | 0.318581 |
Target: 5'- cGGCAGCGGUugGgGAUCU--UGuCGGCCu -3' miRNA: 3'- -UCGUCGUCAugC-UUAGAcgAC-GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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