miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1389 3' -56.6 NC_001335.1 + 33927 1.1 0.000531
Target:  5'- gGGAGCCGUGCAACCUCGGCCACAUCAa -3'
miRNA:   3'- -CCUCGGCACGUUGGAGCCGGUGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 5543 0.75 0.177166
Target:  5'- uGAGUCGgcgGCuGACCUCGGUgACAUCAu -3'
miRNA:   3'- cCUCGGCa--CG-UUGGAGCCGgUGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 7203 0.73 0.249758
Target:  5'- cGGuGGCCGUauugaggcaGCGACCUCGaGCCccGCGUCGa -3'
miRNA:   3'- -CC-UCGGCA---------CGUUGGAGC-CGG--UGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 24317 0.73 0.262893
Target:  5'- aGGAGUCGUGUGACCgagaCGGgC-CAUCAg -3'
miRNA:   3'- -CCUCGGCACGUUGGa---GCCgGuGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 4091 0.72 0.290838
Target:  5'- aGGcAGCCGgcgGCGAUgcaaagcagCUCGGCCGCGUUu -3'
miRNA:   3'- -CC-UCGGCa--CGUUG---------GAGCCGGUGUAGu -5'
1389 3' -56.6 NC_001335.1 + 42201 0.72 0.298178
Target:  5'- -cAGCgCGUGCAGcuCCUCuGCCGCGUCGu -3'
miRNA:   3'- ccUCG-GCACGUU--GGAGcCGGUGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 17146 0.71 0.337024
Target:  5'- cGGcGCUG-GCGAcggcCCUCGGCCAgGUCGc -3'
miRNA:   3'- -CCuCGGCaCGUU----GGAGCCGGUgUAGU- -5'
1389 3' -56.6 NC_001335.1 + 28934 0.71 0.345223
Target:  5'- cGAGCUGUcaccgGCAGCCgcCGGCC-CAUCGc -3'
miRNA:   3'- cCUCGGCA-----CGUUGGa-GCCGGuGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 15999 0.7 0.406534
Target:  5'- -aAGUCG-GCcuuGGCCUgGGCCGCAUCGa -3'
miRNA:   3'- ccUCGGCaCG---UUGGAgCCGGUGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 28446 0.69 0.415834
Target:  5'- aGGA-CCGUGaacuuCCUCGGCUcCAUCAg -3'
miRNA:   3'- -CCUcGGCACguu--GGAGCCGGuGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 7429 0.69 0.425265
Target:  5'- gGGAGCCcu-CGACCUUGGUCAUGUUg -3'
miRNA:   3'- -CCUCGGcacGUUGGAGCCGGUGUAGu -5'
1389 3' -56.6 NC_001335.1 + 16254 0.69 0.434821
Target:  5'- cGGAGCCGgcgcugGCGuagucGCgCUCGGCauggacgGCAUCAa -3'
miRNA:   3'- -CCUCGGCa-----CGU-----UG-GAGCCGg------UGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 23176 0.69 0.4543
Target:  5'- -aGGCuCGUaaccGCAACCUCGGCCAgGgCAc -3'
miRNA:   3'- ccUCG-GCA----CGUUGGAGCCGGUgUaGU- -5'
1389 3' -56.6 NC_001335.1 + 11778 0.68 0.484376
Target:  5'- -aGGCgGUcGCGACCUUGGuCCGCAUg- -3'
miRNA:   3'- ccUCGgCA-CGUUGGAGCC-GGUGUAgu -5'
1389 3' -56.6 NC_001335.1 + 9670 0.68 0.494613
Target:  5'- -uGGCUGcGuCGGCCUUGGCCGCGUa- -3'
miRNA:   3'- ccUCGGCaC-GUUGGAGCCGGUGUAgu -5'
1389 3' -56.6 NC_001335.1 + 3083 0.68 0.504947
Target:  5'- cGAGUCGgacGCGGCgUCGGUCACcuucgGUCAg -3'
miRNA:   3'- cCUCGGCa--CGUUGgAGCCGGUG-----UAGU- -5'
1389 3' -56.6 NC_001335.1 + 4698 0.68 0.504947
Target:  5'- gGGAGaCCGUcGCGAgCgcgGGCCAUGUCGu -3'
miRNA:   3'- -CCUC-GGCA-CGUUgGag-CCGGUGUAGU- -5'
1389 3' -56.6 NC_001335.1 + 4208 0.68 0.515373
Target:  5'- gGGuGCgGUGUuACCUCGGCU--GUCGg -3'
miRNA:   3'- -CCuCGgCACGuUGGAGCCGGugUAGU- -5'
1389 3' -56.6 NC_001335.1 + 26610 0.68 0.525886
Target:  5'- aGGAGCUGaUGCGACCcaUCGGCaaguagGCuGUCGg -3'
miRNA:   3'- -CCUCGGC-ACGUUGG--AGCCGg-----UG-UAGU- -5'
1389 3' -56.6 NC_001335.1 + 10170 0.67 0.536478
Target:  5'- --cGCCGagUGCGACCUCuaaguuggcucuGGCCGCAguUCGc -3'
miRNA:   3'- ccuCGGC--ACGUUGGAG------------CCGGUGU--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.