Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1390 | 3' | -57.1 | NC_001335.1 | + | 46425 | 0.67 | 0.511556 |
Target: 5'- cGCUGGcUCUGCGCCAGGcgcauccucgcACCAagaacgucaAGCCUc -3' miRNA: 3'- -UGGCUuGGAUGCGGUCC-----------UGGU---------UCGGA- -5' |
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1390 | 3' | -57.1 | NC_001335.1 | + | 1717 | 0.68 | 0.470511 |
Target: 5'- aACCuuGCCUGCGCCGa-ACCAGGCg- -3' miRNA: 3'- -UGGcuUGGAUGCGGUccUGGUUCGga -5' |
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1390 | 3' | -57.1 | NC_001335.1 | + | 45584 | 0.68 | 0.470511 |
Target: 5'- uGCuCGAgACCUACGUCuucgccaccgAGGACgAGGCCa -3' miRNA: 3'- -UG-GCU-UGGAUGCGG----------UCCUGgUUCGGa -5' |
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1390 | 3' | -57.1 | NC_001335.1 | + | 36532 | 0.68 | 0.460511 |
Target: 5'- cAUCGGACacacccacCGCCAGGGCauCAAGCCa -3' miRNA: 3'- -UGGCUUGgau-----GCGGUCCUG--GUUCGGa -5' |
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1390 | 3' | -57.1 | NC_001335.1 | + | 16337 | 0.69 | 0.421686 |
Target: 5'- uGCCGAGCgcgaCUACGCCAGcGCC-GGCUc -3' miRNA: 3'- -UGGCUUG----GAUGCGGUCcUGGuUCGGa -5' |
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1390 | 3' | -57.1 | NC_001335.1 | + | 49150 | 0.69 | 0.403027 |
Target: 5'- -aCGAGCCaACGCCAauauGGCUGAGCCg -3' miRNA: 3'- ugGCUUGGaUGCGGUc---CUGGUUCGGa -5' |
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1390 | 3' | -57.1 | NC_001335.1 | + | 2030 | 0.7 | 0.358739 |
Target: 5'- cGCCGugGAUCUGCGCCucGAUgAAGCCg -3' miRNA: 3'- -UGGC--UUGGAUGCGGucCUGgUUCGGa -5' |
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1390 | 3' | -57.1 | NC_001335.1 | + | 5863 | 0.66 | 0.58652 |
Target: 5'- --aGGAUCUGCgugGCCAgcGGGCCGAGCUg -3' miRNA: 3'- uggCUUGGAUG---CGGU--CCUGGUUCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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