miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1390 5' -53.3 NC_001335.1 + 46935 0.66 0.846949
Target:  5'- --uGGCCaaguacgGGCUGGAGAUggcccaGGUCGAGGc -3'
miRNA:   3'- ccuUUGGa------CCGGCCUUUG------CCAGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 31302 0.66 0.82002
Target:  5'- cGGAucacgAACUUGcUCGGAGA-GGUCGAGGu -3'
miRNA:   3'- -CCU-----UUGGACcGGCCUUUgCCAGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 15081 0.66 0.809681
Target:  5'- uGAAGCUgGGCCaGAAGgcccgcgaagcggUGGUCGAGGu -3'
miRNA:   3'- cCUUUGGaCCGGcCUUU-------------GCCAGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 19024 0.66 0.809681
Target:  5'- gGGAAguucggcACCUucucggugGaGCCGGGAACGGuccacuUCGGGAa -3'
miRNA:   3'- -CCUU-------UGGA--------C-CGGCCUUUGCC------AGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 42725 0.66 0.804906
Target:  5'- gGGcAAACCUgcgugcagccucuggGGUCGGGAACGGaaacuucugCGAGGc -3'
miRNA:   3'- -CC-UUUGGA---------------CCGGCCUUUGCCa--------GCUCU- -5'
1390 5' -53.3 NC_001335.1 + 16822 0.67 0.781369
Target:  5'- cGGAcuCCaUGaGCCGGuuGAACaGGUUGAGGa -3'
miRNA:   3'- -CCUuuGG-AC-CGGCC--UUUG-CCAGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 16310 0.67 0.771287
Target:  5'- --cGACgCUGGCCccgacgcuGGAGACGGUCaAGGc -3'
miRNA:   3'- ccuUUG-GACCGG--------CCUUUGCCAGcUCU- -5'
1390 5' -53.3 NC_001335.1 + 30304 0.68 0.708149
Target:  5'- cGAAGCCUGGgUGGugcCGGUgGAGc -3'
miRNA:   3'- cCUUUGGACCgGCCuuuGCCAgCUCu -5'
1390 5' -53.3 NC_001335.1 + 9244 0.68 0.708149
Target:  5'- ---uACCUGGcCCGGAuccuGGCGuUCGAGGa -3'
miRNA:   3'- ccuuUGGACC-GGCCU----UUGCcAGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 35207 0.69 0.661081
Target:  5'- aGGGAACCUGGCCgauguuccggggaaGGAAGgGcGUCGu-- -3'
miRNA:   3'- -CCUUUGGACCGG--------------CCUUUgC-CAGCucu -5'
1390 5' -53.3 NC_001335.1 + 14379 0.7 0.62014
Target:  5'- cGAGACCUGGaCCGGugcuacCGGUUGGa- -3'
miRNA:   3'- cCUUUGGACC-GGCCuuu---GCCAGCUcu -5'
1390 5' -53.3 NC_001335.1 + 23262 0.7 0.609079
Target:  5'- cGGAGugcCCUGGCCGaGGuuGCGGUuaCGAGc -3'
miRNA:   3'- -CCUUu--GGACCGGC-CUu-UGCCA--GCUCu -5'
1390 5' -53.3 NC_001335.1 + 32630 0.71 0.564037
Target:  5'- aGGAAgcGCCUGGUggCGaGAAGCGGUacugccagcacggCGAGAu -3'
miRNA:   3'- -CCUU--UGGACCG--GC-CUUUGCCA-------------GCUCU- -5'
1390 5' -53.3 NC_001335.1 + 40373 0.72 0.511467
Target:  5'- --uGACCUGGUa-GAAGuCGGUCGAGAc -3'
miRNA:   3'- ccuUUGGACCGgcCUUU-GCCAGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 20240 0.72 0.480295
Target:  5'- aGGGAugguccaaCUGGCCGGcGACGGccaggUCGAGGg -3'
miRNA:   3'- -CCUUug------GACCGGCCuUUGCC-----AGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 25271 0.74 0.374117
Target:  5'- cGAAGCCUGGCuCGcgggcgaGAAGCGGcucaUCGAGAu -3'
miRNA:   3'- cCUUUGGACCG-GC-------CUUUGCC----AGCUCU- -5'
1390 5' -53.3 NC_001335.1 + 34976 1.12 0.001107
Target:  5'- aGGAAACCUGGCCGGAAACGGUCGAGAg -3'
miRNA:   3'- -CCUUUGGACCGGCCUUUGCCAGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.