miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1392 5' -58.9 NC_001335.1 + 11541 0.66 0.502336
Target:  5'- gCUGGaCGAUggagAUCUUCuCCGCUucGGCGAa -3'
miRNA:   3'- -GACCaGCUG----UAGGAG-GGCGA--CCGCUa -5'
1392 5' -58.9 NC_001335.1 + 37817 0.66 0.502336
Target:  5'- gUGaGUUGACAUCCUCgCCuuCUGGCa-- -3'
miRNA:   3'- gAC-CAGCUGUAGGAG-GGc-GACCGcua -5'
1392 5' -58.9 NC_001335.1 + 31764 0.66 0.472023
Target:  5'- -cGGUaCGuCAUCaaggCCCGCUGGCa-- -3'
miRNA:   3'- gaCCA-GCuGUAGga--GGGCGACCGcua -5'
1392 5' -58.9 NC_001335.1 + 35167 0.66 0.472023
Target:  5'- uUGGUC----UCgUCCCGCUGGaCGAUg -3'
miRNA:   3'- gACCAGcuguAGgAGGGCGACC-GCUA- -5'
1392 5' -58.9 NC_001335.1 + 8104 0.66 0.462125
Target:  5'- aCUGGUCGACGuacgccucgaacUCCUUCaCGUcGGCGc- -3'
miRNA:   3'- -GACCAGCUGU------------AGGAGG-GCGaCCGCua -5'
1392 5' -58.9 NC_001335.1 + 34246 0.66 0.462125
Target:  5'- gUGGUCGACcUCCa-UCGC-GGCGAUg -3'
miRNA:   3'- gACCAGCUGuAGGagGGCGaCCGCUA- -5'
1392 5' -58.9 NC_001335.1 + 20560 0.67 0.452337
Target:  5'- gUGGagCGAUugaCCUCCCGCcucugGGCGGUc -3'
miRNA:   3'- gACCa-GCUGua-GGAGGGCGa----CCGCUA- -5'
1392 5' -58.9 NC_001335.1 + 48416 0.67 0.427431
Target:  5'- -gGGUCGAguCAUCCaccgcagcggccacgUCCUGCUGGCc-- -3'
miRNA:   3'- gaCCAGCU--GUAGG---------------AGGGCGACCGcua -5'
1392 5' -58.9 NC_001335.1 + 1587 0.68 0.396123
Target:  5'- -aGGUCGGC-UUCUCagCCGgUGGCGAc -3'
miRNA:   3'- gaCCAGCUGuAGGAG--GGCgACCGCUa -5'
1392 5' -58.9 NC_001335.1 + 15596 0.68 0.360394
Target:  5'- -aGG-CGggcaaccACAUCCUgCUGCUGGCGAa -3'
miRNA:   3'- gaCCaGC-------UGUAGGAgGGCGACCGCUa -5'
1392 5' -58.9 NC_001335.1 + 5717 0.69 0.305502
Target:  5'- gCUGGUgGACAacgugccgUCCUUgCGCUGGCu-- -3'
miRNA:   3'- -GACCAgCUGU--------AGGAGgGCGACCGcua -5'
1392 5' -58.9 NC_001335.1 + 16197 0.7 0.263174
Target:  5'- gCUGGUCGGCAUCgUggccggUCUGCUGGcCGGUc -3'
miRNA:   3'- -GACCAGCUGUAGgA------GGGCGACC-GCUA- -5'
1392 5' -58.9 NC_001335.1 + 25274 0.72 0.219382
Target:  5'- -gGGUUGACGuaugaggcuuggaUCCUCCCGCUGcGCuGAg -3'
miRNA:   3'- gaCCAGCUGU-------------AGGAGGGCGAC-CG-CUa -5'
1392 5' -58.9 NC_001335.1 + 40033 0.74 0.164348
Target:  5'- -cGGUCGACGUUCUCCUcggagacguuGCgGGCGAg -3'
miRNA:   3'- gaCCAGCUGUAGGAGGG----------CGaCCGCUa -5'
1392 5' -58.9 NC_001335.1 + 35832 1.06 0.00064
Target:  5'- cCUGGUCGACAUCCUCCCGCUGGCGAUg -3'
miRNA:   3'- -GACCAGCUGUAGGAGGGCGACCGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.