miRNA display CGI


Results 1 - 3 of 3 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13929 5' -52 NC_003515.1 + 1664 0.67 0.130423
Target:  5'- -uGCUCGGGCAGCugucGCUAug-GCUGc -3'
miRNA:   3'- agUGGGCUCGUCGu---CGAUuaaCGAUa -5'
13929 5' -52 NC_003515.1 + 1676 0.68 0.117191
Target:  5'- -uGCCCGAGCAuCAGCUucg-GCUu- -3'
miRNA:   3'- agUGGGCUCGUcGUCGAuuaaCGAua -5'
13929 5' -52 NC_003515.1 + 737 1.06 6.1e-05
Target:  5'- gUCACCCGAGCAGCAGCUAAUUGCUAUu -3'
miRNA:   3'- -AGUGGGCUCGUCGUCGAUUAACGAUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.