Results 1 - 20 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13934 | 3' | -59.2 | NC_003521.1 | + | 200047 | 1.1 | 0.001834 |
Target: 5'- uGACGCAACGCUGCCUCACCGGCUGGCu -3' miRNA: 3'- -CUGCGUUGCGACGGAGUGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 719 | 1.1 | 0.001834 |
Target: 5'- uGACGCAACGCUGCCUCACCGGCUGGCu -3' miRNA: 3'- -CUGCGUUGCGACGGAGUGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 224679 | 0.82 | 0.147832 |
Target: 5'- cACGCAGCGCcugGCCggcgaggugUACCGGCUGGCc -3' miRNA: 3'- cUGCGUUGCGa--CGGa--------GUGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 224809 | 0.82 | 0.151498 |
Target: 5'- cGCGCGugGCguaggGCgUCugCGGCUGGCg -3' miRNA: 3'- cUGCGUugCGa----CGgAGugGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 150971 | 0.78 | 0.267293 |
Target: 5'- cGACGCGGCGCUggcgGCCgaCAUCGGCUacGGCg -3' miRNA: 3'- -CUGCGUUGCGA----CGGa-GUGGCCGA--CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 168491 | 0.77 | 0.277756 |
Target: 5'- aGGCGCucaagagcGCGCUGCUcaagcugcacaacaUCACCGuGCUGGCg -3' miRNA: 3'- -CUGCGu-------UGCGACGG--------------AGUGGC-CGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 209737 | 0.77 | 0.312466 |
Target: 5'- uGCGCAGCggcagccacgGCaGCCggagUACCGGCUGGCa -3' miRNA: 3'- cUGCGUUG----------CGaCGGa---GUGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 2710 | 0.76 | 0.319373 |
Target: 5'- aACGCcacucgugcgggAGCGCcgucaccGCCUCGCUGGCUGGCu -3' miRNA: 3'- cUGCG------------UUGCGa------CGGAGUGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 226991 | 0.76 | 0.347397 |
Target: 5'- aGCGCAacgagggACGCUGCCUgugucugggucCGCCgaagGGCUGGCa -3' miRNA: 3'- cUGCGU-------UGCGACGGA-----------GUGG----CCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 138667 | 0.76 | 0.348138 |
Target: 5'- aGACGgGGCGgUgaGCCUCACCGGCgacaaGGCc -3' miRNA: 3'- -CUGCgUUGCgA--CGGAGUGGCCGa----CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 153022 | 0.75 | 0.361673 |
Target: 5'- cGACGCcguuccgcGCGCUGCCcguggaggacaACCGGCUGGUg -3' miRNA: 3'- -CUGCGu-------UGCGACGGag---------UGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 238452 | 0.75 | 0.363199 |
Target: 5'- aGGCGCAGgGCgGCCUCgGCgGGCggGGCg -3' miRNA: 3'- -CUGCGUUgCGaCGGAG-UGgCCGa-CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 202864 | 0.75 | 0.363199 |
Target: 5'- aGGCGCAGgGCgGCCUCgGCgGGCggGGCg -3' miRNA: 3'- -CUGCGUUgCGaCGGAG-UGgCCGa-CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 129981 | 0.75 | 0.378706 |
Target: 5'- -gUGCAccguCGCUGCCgcugCGCCGGCggcGGCg -3' miRNA: 3'- cuGCGUu---GCGACGGa---GUGGCCGa--CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 53620 | 0.75 | 0.378706 |
Target: 5'- aGCGgGACGgUGCUgcaCAUCGGCUGGCc -3' miRNA: 3'- cUGCgUUGCgACGGa--GUGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 70127 | 0.75 | 0.378706 |
Target: 5'- uGGCGCuGCGCggcgGCCUCAUCGGCa-GCg -3' miRNA: 3'- -CUGCGuUGCGa---CGGAGUGGCCGacCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 77297 | 0.75 | 0.386625 |
Target: 5'- -cUGCAACGCcuucuacgGCUUCACCGGCgUGGUc -3' miRNA: 3'- cuGCGUUGCGa-------CGGAGUGGCCG-ACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 143810 | 0.74 | 0.427812 |
Target: 5'- --gGCGGCuGCUGCUcgUCGCCGGC-GGCg -3' miRNA: 3'- cugCGUUG-CGACGG--AGUGGCCGaCCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 192308 | 0.74 | 0.436357 |
Target: 5'- gGACGCcGCGuCUGCCgcgcaCGCCGGC-GGUg -3' miRNA: 3'- -CUGCGuUGC-GACGGa----GUGGCCGaCCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 150038 | 0.73 | 0.462566 |
Target: 5'- uGCGCGACGCcacGCUgCACCGGgUGGUc -3' miRNA: 3'- cUGCGUUGCGa--CGGaGUGGCCgACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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