miRNA display CGI


Results 1 - 20 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 462 0.68 0.757333
Target:  5'- uGAgGCAGCGUUGCgUCACaGGCUcuGCc -3'
miRNA:   3'- -CUgCGUUGCGACGgAGUGgCCGAc-CG- -5'
13934 3' -59.2 NC_003521.1 + 719 1.1 0.001834
Target:  5'- uGACGCAACGCUGCCUCACCGGCUGGCu -3'
miRNA:   3'- -CUGCGUUGCGACGGAGUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 2710 0.76 0.319373
Target:  5'- aACGCcacucgugcgggAGCGCcgucaccGCCUCGCUGGCUGGCu -3'
miRNA:   3'- cUGCG------------UUGCGa------CGGAGUGGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 4630 0.68 0.771819
Target:  5'- aGCGgGACGCggGCCgcgaugagcgaacCGCCGGC-GGCg -3'
miRNA:   3'- cUGCgUUGCGa-CGGa------------GUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 6349 0.7 0.671971
Target:  5'- uGGCGgAACGCcGCCgCACCGGCcgucGCa -3'
miRNA:   3'- -CUGCgUUGCGaCGGaGUGGCCGac--CG- -5'
13934 3' -59.2 NC_003521.1 + 7663 0.7 0.642701
Target:  5'- aGAUGCcaGACGCUGaa--GCCGGCgGGCa -3'
miRNA:   3'- -CUGCG--UUGCGACggagUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 7882 0.68 0.766419
Target:  5'- aGGCGCAGCGCguagcauagGCUUCGCacaCGGCUcuGGa -3'
miRNA:   3'- -CUGCGUUGCGa--------CGGAGUG---GCCGA--CCg -5'
13934 3' -59.2 NC_003521.1 + 11461 0.7 0.635854
Target:  5'- aGGCGCGACgGCucugaagacaggugcUGCCUCACCGGgaucaucCUcGGCu -3'
miRNA:   3'- -CUGCGUUG-CG---------------ACGGAGUGGCC-------GA-CCG- -5'
13934 3' -59.2 NC_003521.1 + 12545 0.66 0.878786
Target:  5'- aGACGUGuuucaaCCUCACCGuGCUGGCc -3'
miRNA:   3'- -CUGCGUugcgacGGAGUGGC-CGACCG- -5'
13934 3' -59.2 NC_003521.1 + 18706 0.68 0.738865
Target:  5'- cGGCGCGAUccggcugugGCUGCC--GCUGGCggcGGCg -3'
miRNA:   3'- -CUGCGUUG---------CGACGGagUGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 18762 0.7 0.652475
Target:  5'- cGACGgGuCGCUGCUgcgaCGGCUGGUg -3'
miRNA:   3'- -CUGCgUuGCGACGGagugGCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 19076 0.7 0.671971
Target:  5'- aGACGCuGACGCUGUCguuccgcuugaUCACCcagacGGCcGGCa -3'
miRNA:   3'- -CUGCG-UUGCGACGG-----------AGUGG-----CCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 26257 0.68 0.766419
Target:  5'- aACGcCAGCGCUGCUgcaccaccaggCACCGGUcucgaGGCc -3'
miRNA:   3'- cUGC-GUUGCGACGGa----------GUGGCCGa----CCG- -5'
13934 3' -59.2 NC_003521.1 + 26556 0.66 0.871884
Target:  5'- aGCGCGugGCccuggccugGCCUCgagACCGGUgccuggGGUg -3'
miRNA:   3'- cUGCGUugCGa--------CGGAG---UGGCCGa-----CCG- -5'
13934 3' -59.2 NC_003521.1 + 28250 0.7 0.675857
Target:  5'- -cCGCucACGCUGCCgccguggccgugagCGCCGcCUGGCg -3'
miRNA:   3'- cuGCGu-UGCGACGGa-------------GUGGCcGACCG- -5'
13934 3' -59.2 NC_003521.1 + 28325 0.67 0.818373
Target:  5'- cGGCGCGGC-CUGCggacCGCCGG-UGGCc -3'
miRNA:   3'- -CUGCGUUGcGACGga--GUGGCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 30233 0.66 0.871884
Target:  5'- uGGCGUcGCGCUGCaggucCGCgCGGUugccgUGGCg -3'
miRNA:   3'- -CUGCGuUGCGACGga---GUG-GCCG-----ACCG- -5'
13934 3' -59.2 NC_003521.1 + 31091 0.69 0.729499
Target:  5'- aGGCGCccguggaguuCGCggGUUUCGCCGGCgGGCc -3'
miRNA:   3'- -CUGCGuu--------GCGa-CGGAGUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 31236 0.69 0.710545
Target:  5'- -cCGCAGCuGCUGCUgcgugccgagCGCCuGGCUuGGCa -3'
miRNA:   3'- cuGCGUUG-CGACGGa---------GUGG-CCGA-CCG- -5'
13934 3' -59.2 NC_003521.1 + 31736 0.68 0.738865
Target:  5'- cGACGCGguuACGUgauguaccugGCUUCuaacGCCGuGCUGGCg -3'
miRNA:   3'- -CUGCGU---UGCGa---------CGGAG----UGGC-CGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.