Results 1 - 20 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13934 | 3' | -59.2 | NC_003521.1 | + | 462 | 0.68 | 0.757333 |
Target: 5'- uGAgGCAGCGUUGCgUCACaGGCUcuGCc -3' miRNA: 3'- -CUgCGUUGCGACGgAGUGgCCGAc-CG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 719 | 1.1 | 0.001834 |
Target: 5'- uGACGCAACGCUGCCUCACCGGCUGGCu -3' miRNA: 3'- -CUGCGUUGCGACGGAGUGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 2710 | 0.76 | 0.319373 |
Target: 5'- aACGCcacucgugcgggAGCGCcgucaccGCCUCGCUGGCUGGCu -3' miRNA: 3'- cUGCG------------UUGCGa------CGGAGUGGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 4630 | 0.68 | 0.771819 |
Target: 5'- aGCGgGACGCggGCCgcgaugagcgaacCGCCGGC-GGCg -3' miRNA: 3'- cUGCgUUGCGa-CGGa------------GUGGCCGaCCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 6349 | 0.7 | 0.671971 |
Target: 5'- uGGCGgAACGCcGCCgCACCGGCcgucGCa -3' miRNA: 3'- -CUGCgUUGCGaCGGaGUGGCCGac--CG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 7663 | 0.7 | 0.642701 |
Target: 5'- aGAUGCcaGACGCUGaa--GCCGGCgGGCa -3' miRNA: 3'- -CUGCG--UUGCGACggagUGGCCGaCCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 7882 | 0.68 | 0.766419 |
Target: 5'- aGGCGCAGCGCguagcauagGCUUCGCacaCGGCUcuGGa -3' miRNA: 3'- -CUGCGUUGCGa--------CGGAGUG---GCCGA--CCg -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 11461 | 0.7 | 0.635854 |
Target: 5'- aGGCGCGACgGCucugaagacaggugcUGCCUCACCGGgaucaucCUcGGCu -3' miRNA: 3'- -CUGCGUUG-CG---------------ACGGAGUGGCC-------GA-CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 12545 | 0.66 | 0.878786 |
Target: 5'- aGACGUGuuucaaCCUCACCGuGCUGGCc -3' miRNA: 3'- -CUGCGUugcgacGGAGUGGC-CGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 18706 | 0.68 | 0.738865 |
Target: 5'- cGGCGCGAUccggcugugGCUGCC--GCUGGCggcGGCg -3' miRNA: 3'- -CUGCGUUG---------CGACGGagUGGCCGa--CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 18762 | 0.7 | 0.652475 |
Target: 5'- cGACGgGuCGCUGCUgcgaCGGCUGGUg -3' miRNA: 3'- -CUGCgUuGCGACGGagugGCCGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 19076 | 0.7 | 0.671971 |
Target: 5'- aGACGCuGACGCUGUCguuccgcuugaUCACCcagacGGCcGGCa -3' miRNA: 3'- -CUGCG-UUGCGACGG-----------AGUGG-----CCGaCCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 26257 | 0.68 | 0.766419 |
Target: 5'- aACGcCAGCGCUGCUgcaccaccaggCACCGGUcucgaGGCc -3' miRNA: 3'- cUGC-GUUGCGACGGa----------GUGGCCGa----CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 26556 | 0.66 | 0.871884 |
Target: 5'- aGCGCGugGCccuggccugGCCUCgagACCGGUgccuggGGUg -3' miRNA: 3'- cUGCGUugCGa--------CGGAG---UGGCCGa-----CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 28250 | 0.7 | 0.675857 |
Target: 5'- -cCGCucACGCUGCCgccguggccgugagCGCCGcCUGGCg -3' miRNA: 3'- cuGCGu-UGCGACGGa-------------GUGGCcGACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 28325 | 0.67 | 0.818373 |
Target: 5'- cGGCGCGGC-CUGCggacCGCCGG-UGGCc -3' miRNA: 3'- -CUGCGUUGcGACGga--GUGGCCgACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 30233 | 0.66 | 0.871884 |
Target: 5'- uGGCGUcGCGCUGCaggucCGCgCGGUugccgUGGCg -3' miRNA: 3'- -CUGCGuUGCGACGga---GUG-GCCG-----ACCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 31091 | 0.69 | 0.729499 |
Target: 5'- aGGCGCccguggaguuCGCggGUUUCGCCGGCgGGCc -3' miRNA: 3'- -CUGCGuu--------GCGa-CGGAGUGGCCGaCCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 31236 | 0.69 | 0.710545 |
Target: 5'- -cCGCAGCuGCUGCUgcgugccgagCGCCuGGCUuGGCa -3' miRNA: 3'- cuGCGUUG-CGACGGa---------GUGG-CCGA-CCG- -5' |
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13934 | 3' | -59.2 | NC_003521.1 | + | 31736 | 0.68 | 0.738865 |
Target: 5'- cGACGCGguuACGUgauguaccugGCUUCuaacGCCGuGCUGGCg -3' miRNA: 3'- -CUGCGU---UGCGa---------CGGAG----UGGC-CGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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