miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 26556 0.66 0.871884
Target:  5'- aGCGCGugGCccuggccugGCCUCgagACCGGUgccuggGGUg -3'
miRNA:   3'- cUGCGUugCGa--------CGGAG---UGGCCGa-----CCG- -5'
13934 3' -59.2 NC_003521.1 + 75818 0.66 0.871884
Target:  5'- gGGCGCuGGCGUaGCCgcCGCCGGCgccGCu -3'
miRNA:   3'- -CUGCG-UUGCGaCGGa-GUGGCCGac-CG- -5'
13934 3' -59.2 NC_003521.1 + 201949 0.66 0.864785
Target:  5'- gGAUGCccgugUGCUGCC--ACCGGC-GGCg -3'
miRNA:   3'- -CUGCGuu---GCGACGGagUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 234349 0.66 0.864785
Target:  5'- uGACGCAGC-CaGCgCUCGCCGaGUcccagGGCg -3'
miRNA:   3'- -CUGCGUUGcGaCG-GAGUGGC-CGa----CCG- -5'
13934 3' -59.2 NC_003521.1 + 239367 0.66 0.864785
Target:  5'- gGAUGCccgugUGCUGCC--ACCGGC-GGCg -3'
miRNA:   3'- -CUGCGuu---GCGACGGagUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 182507 0.66 0.864785
Target:  5'- cGGC-UAGCGagacaUGCgCUCGCCGGCagguuuUGGCg -3'
miRNA:   3'- -CUGcGUUGCg----ACG-GAGUGGCCG------ACCG- -5'
13934 3' -59.2 NC_003521.1 + 232675 0.66 0.864785
Target:  5'- aGGCGCuGGCGUUGCCgUGCC-GCaGGCg -3'
miRNA:   3'- -CUGCG-UUGCGACGGaGUGGcCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 235772 0.66 0.864785
Target:  5'- gGGgGCGGCG-UGCCcCGCCGGCcgcgacuccGGCg -3'
miRNA:   3'- -CUgCGUUGCgACGGaGUGGCCGa--------CCG- -5'
13934 3' -59.2 NC_003521.1 + 214585 0.66 0.864785
Target:  5'- cGAUGCGcucuucaccaccACGCUG-CUCACCguGGUgaugGGCa -3'
miRNA:   3'- -CUGCGU------------UGCGACgGAGUGG--CCGa---CCG- -5'
13934 3' -59.2 NC_003521.1 + 68798 0.66 0.864785
Target:  5'- --gGCGGcCGCUGCCgccguCCGGUgucggUGGCg -3'
miRNA:   3'- cugCGUU-GCGACGGagu--GGCCG-----ACCG- -5'
13934 3' -59.2 NC_003521.1 + 131336 0.66 0.864785
Target:  5'- -gUGCAGCGCuucgccccgUGCCgucgcaagcUCAUCGGC-GGCa -3'
miRNA:   3'- cuGCGUUGCG---------ACGG---------AGUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 70524 0.66 0.864785
Target:  5'- cGACGUGAC-C-GCCUCGCgcuCGGCcGGCc -3'
miRNA:   3'- -CUGCGUUGcGaCGGAGUG---GCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 127301 0.66 0.864785
Target:  5'- cGugGUGGCGC-GCCUCGau-GUUGGCg -3'
miRNA:   3'- -CugCGUUGCGaCGGAGUggcCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 129902 0.66 0.864785
Target:  5'- cGACGaCGGgGCgGCCgcgCGCCuGCUGcGCg -3'
miRNA:   3'- -CUGC-GUUgCGaCGGa--GUGGcCGAC-CG- -5'
13934 3' -59.2 NC_003521.1 + 42557 0.66 0.864785
Target:  5'- cGACGCccgGCUGgCUguCCGGC-GGCc -3'
miRNA:   3'- -CUGCGuugCGACgGAguGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 116883 0.66 0.864785
Target:  5'- uGGCGCGGCuGCggcgGCg-CGCCGGCgGGa -3'
miRNA:   3'- -CUGCGUUG-CGa---CGgaGUGGCCGaCCg -5'
13934 3' -59.2 NC_003521.1 + 118549 0.66 0.864785
Target:  5'- gGugGUAGUGCUGCUgcuacCGCCG-CUGGUg -3'
miRNA:   3'- -CugCGUUGCGACGGa----GUGGCcGACCG- -5'
13934 3' -59.2 NC_003521.1 + 54905 0.66 0.864785
Target:  5'- uGCGCAcCGuUUGCaggaucagCGCCGGCgugGGCa -3'
miRNA:   3'- cUGCGUuGC-GACGga------GUGGCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 225290 0.66 0.857496
Target:  5'- cGACGUGAucUGCUGCgccgagcggCUCAUCGuGCUGGg -3'
miRNA:   3'- -CUGCGUU--GCGACG---------GAGUGGC-CGACCg -5'
13934 3' -59.2 NC_003521.1 + 130070 0.66 0.857496
Target:  5'- -cCGCGGC-CUGCuCUCGCUGGCcgagUGGa -3'
miRNA:   3'- cuGCGUUGcGACG-GAGUGGCCG----ACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.