miRNA display CGI


Results 101 - 120 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 111718 0.68 0.688233
Target:  5'- aGuCCgugCGCCGGCACgccacccACAGCcUGCAGUa -3'
miRNA:   3'- aCcGGa--GCGGUCGUG-------UGUCG-ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 138346 0.68 0.70866
Target:  5'- cGGCCUgggaggGCCAGCGCcuCAGCUGUc-- -3'
miRNA:   3'- aCCGGAg-----CGGUCGUGu-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 109508 0.68 0.727867
Target:  5'- gUGGUCgCGCCGGC-CGCuGCUcgaGCAGg -3'
miRNA:   3'- -ACCGGaGCGGUCGuGUGuCGA---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 172578 0.68 0.679415
Target:  5'- aGGCCUgCGCCAGCGgCGucaaGGCUGUguGGg -3'
miRNA:   3'- aCCGGA-GCGGUCGU-GUg---UCGACG--UCa -5'
13934 5' -59.7 NC_003521.1 + 213852 0.68 0.679415
Target:  5'- cUGGUCaUCGCCGGCugcuacgugGCGCuGCUGuCGGUc -3'
miRNA:   3'- -ACCGG-AGCGGUCG---------UGUGuCGAC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 65781 0.68 0.679415
Target:  5'- cGGCgUCGcCCAGCugACAGC-GCu-- -3'
miRNA:   3'- aCCGgAGC-GGUCGugUGUCGaCGuca -5'
13934 5' -59.7 NC_003521.1 + 54410 0.68 0.679415
Target:  5'- cGGCCUcuccaaCGCCGGCGguaGCAGCaUGCAc- -3'
miRNA:   3'- aCCGGA------GCGGUCGUg--UGUCG-ACGUca -5'
13934 5' -59.7 NC_003521.1 + 117422 0.68 0.68921
Target:  5'- aGGCUUggagggaGCCGGCGCgcuGCGGCgugGCGGUg -3'
miRNA:   3'- aCCGGAg------CGGUCGUG---UGUCGa--CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 235227 0.68 0.698961
Target:  5'- aGGCCUCGUUGGUcCGCAGgCUGgAGc -3'
miRNA:   3'- aCCGGAGCGGUCGuGUGUC-GACgUCa -5'
13934 5' -59.7 NC_003521.1 + 167573 0.68 0.718298
Target:  5'- cGGCgCUCGUCGuCACGCcGCUGCuGUu -3'
miRNA:   3'- aCCG-GAGCGGUcGUGUGuCGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 109878 0.68 0.718298
Target:  5'- aGGCCUUGCguGCcaucucCACGGC-GCGGg -3'
miRNA:   3'- aCCGGAGCGguCGu-----GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 213713 0.68 0.717337
Target:  5'- gGGCCUCGgggaugcCCAGcCAgACGGCgccGCAGa -3'
miRNA:   3'- aCCGGAGC-------GGUC-GUgUGUCGa--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 118905 0.68 0.68921
Target:  5'- aGGuCCUCGCCcucgucGGCGcCGCGGCguggGCGGc -3'
miRNA:   3'- aCC-GGAGCGG------UCGU-GUGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 144290 0.68 0.68921
Target:  5'- cGGCgaCUCGCUGcugccGCACGC-GCUGCGGUu -3'
miRNA:   3'- aCCG--GAGCGGU-----CGUGUGuCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 30222 0.68 0.68921
Target:  5'- cGGCCggcCGUUGGCGuCGC-GCUGCAGg -3'
miRNA:   3'- aCCGGa--GCGGUCGU-GUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 166302 0.68 0.727867
Target:  5'- gUGGCCUCGUU-GCGUACGGCcaGCAGg -3'
miRNA:   3'- -ACCGGAGCGGuCGUGUGUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 224862 0.68 0.707693
Target:  5'- aGGCCguagcgcgccagcUCGUCcaggugcuuGGCGCACAGCaGCAGa -3'
miRNA:   3'- aCCGG-------------AGCGG---------UCGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 223120 0.68 0.708661
Target:  5'- cGGCCgucUCGCgCAGCAC-CAGgaGcCAGUu -3'
miRNA:   3'- aCCGG---AGCG-GUCGUGuGUCgaC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 150763 0.68 0.727867
Target:  5'- gGGCCcCGCCGGCGCcguaaaAGCUGaAGg -3'
miRNA:   3'- aCCGGaGCGGUCGUGug----UCGACgUCa -5'
13934 5' -59.7 NC_003521.1 + 149200 0.69 0.659722
Target:  5'- -aGCacacgCGCCAGCACGgcGCUGCGGUg -3'
miRNA:   3'- acCGga---GCGGUCGUGUguCGACGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.