miRNA display CGI


Results 121 - 140 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 149200 0.69 0.659722
Target:  5'- -aGCacacgCGCCAGCACGgcGCUGCGGUg -3'
miRNA:   3'- acCGga---GCGGUCGUGUguCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 60278 0.69 0.659722
Target:  5'- aGGCCggUGCUGuCGCGCuGCUGCAGg -3'
miRNA:   3'- aCCGGa-GCGGUcGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 28401 0.69 0.659722
Target:  5'- -cGCCgUCGCCAGgGCAaGGCUGguGg -3'
miRNA:   3'- acCGG-AGCGGUCgUGUgUCGACguCa -5'
13934 5' -59.7 NC_003521.1 + 104503 0.69 0.630047
Target:  5'- aGGCCugcagcUCGCgCAGCuccacguccucGCugGGCUGCAGc -3'
miRNA:   3'- aCCGG------AGCG-GUCG-----------UGugUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 239647 0.69 0.659722
Target:  5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3'
miRNA:   3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 220826 0.69 0.630047
Target:  5'- -aGCCgUCGCCGGUACGCucAGCggagUGCGGUg -3'
miRNA:   3'- acCGG-AGCGGUCGUGUG--UCG----ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 130048 0.69 0.669583
Target:  5'- cGGCCUCGgC-GCGCACGuGC-GCGGg -3'
miRNA:   3'- aCCGGAGCgGuCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 226164 0.69 0.617181
Target:  5'- cGGCgUCGuUCAGCGCGCAGaagggccagacgcaCUGCAGc -3'
miRNA:   3'- aCCGgAGC-GGUCGUGUGUC--------------GACGUCa -5'
13934 5' -59.7 NC_003521.1 + 101066 0.69 0.630047
Target:  5'- cGGCCggauccugcCGUCGGCACGCGGcCUGCu-- -3'
miRNA:   3'- aCCGGa--------GCGGUCGUGUGUC-GACGuca -5'
13934 5' -59.7 NC_003521.1 + 101519 0.69 0.630047
Target:  5'- cGGCCga-CCAGCAgGC-GCUGCAGc -3'
miRNA:   3'- aCCGGagcGGUCGUgUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 110027 0.69 0.630047
Target:  5'- cGGCuCUCGUgGGCGC---GCUGCGGUg -3'
miRNA:   3'- aCCG-GAGCGgUCGUGuguCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 183869 0.69 0.659723
Target:  5'- -aGUCUCGCCAaCACGuuacucggcauCAGCUGCAGa -3'
miRNA:   3'- acCGGAGCGGUcGUGU-----------GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 226622 0.69 0.659723
Target:  5'- gGGgCUCGCCgcAGCACAcCAGCUugcucGCGGc -3'
miRNA:   3'- aCCgGAGCGG--UCGUGU-GUCGA-----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 201668 0.69 0.659723
Target:  5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3'
miRNA:   3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 103566 0.69 0.659723
Target:  5'- gGGCCcaggUCGCCcGCGCAgaAGCUGCGc- -3'
miRNA:   3'- aCCGG----AGCGGuCGUGUg-UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 216527 0.69 0.669583
Target:  5'- aGGaCCUCgaaucgcucgaGCCAGCACAguGCaGCGGc -3'
miRNA:   3'- aCC-GGAG-----------CGGUCGUGUguCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 98395 0.69 0.659723
Target:  5'- aGGCUUCGgCGGCGCu--GCUGCuGUu -3'
miRNA:   3'- aCCGGAGCgGUCGUGuguCGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 27100 0.69 0.669583
Target:  5'- aGGCuCUCGaCGGCGCGCAgGCcggUGCGGg -3'
miRNA:   3'- aCCG-GAGCgGUCGUGUGU-CG---ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 87643 0.69 0.669583
Target:  5'- aGGCCUCGCacaGGCuggagGCGCAGCccacgaUGUGGUu -3'
miRNA:   3'- aCCGGAGCGg--UCG-----UGUGUCG------ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 76143 0.69 0.620149
Target:  5'- aGGuCCUCGaCGcGCACACGGC-GCAGg -3'
miRNA:   3'- aCC-GGAGCgGU-CGUGUGUCGaCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.