miRNA display CGI


Results 101 - 120 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 223120 0.68 0.708661
Target:  5'- cGGCCgucUCGCgCAGCAC-CAGgaGcCAGUu -3'
miRNA:   3'- aCCGG---AGCG-GUCGUGuGUCgaC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 224862 0.68 0.707693
Target:  5'- aGGCCguagcgcgccagcUCGUCcaggugcuuGGCGCACAGCaGCAGa -3'
miRNA:   3'- aCCGG-------------AGCGG---------UCGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 239782 0.68 0.698962
Target:  5'- gUGGCCccgaCGCCGGC-CAUcuGGCUGCGc- -3'
miRNA:   3'- -ACCGGa---GCGGUCGuGUG--UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 30222 0.68 0.68921
Target:  5'- cGGCCggcCGUUGGCGuCGC-GCUGCAGg -3'
miRNA:   3'- aCCGGa--GCGGUCGU-GUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 144290 0.68 0.68921
Target:  5'- cGGCgaCUCGCUGcugccGCACGC-GCUGCGGUu -3'
miRNA:   3'- aCCG--GAGCGGU-----CGUGUGuCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 145252 0.68 0.727867
Target:  5'- aGGCCUCGgUGGCAUGCcGCUGgcuCAGg -3'
miRNA:   3'- aCCGGAGCgGUCGUGUGuCGAC---GUCa -5'
13934 5' -59.7 NC_003521.1 + 111718 0.68 0.688233
Target:  5'- aGuCCgugCGCCGGCACgccacccACAGCcUGCAGUa -3'
miRNA:   3'- aCcGGa--GCGGUCGUG-------UGUCG-ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 213852 0.68 0.679415
Target:  5'- cUGGUCaUCGCCGGCugcuacgugGCGCuGCUGuCGGUc -3'
miRNA:   3'- -ACCGG-AGCGGUCG---------UGUGuCGAC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 223732 0.68 0.727867
Target:  5'- gGGCCgugaCGCCGGCGCgGCGGCc-CAGa -3'
miRNA:   3'- aCCGGa---GCGGUCGUG-UGUCGacGUCa -5'
13934 5' -59.7 NC_003521.1 + 132554 0.68 0.725004
Target:  5'- uUGGCCUCcacguGgCGGCACACGGUcaagagguuggcguUGCGGc -3'
miRNA:   3'- -ACCGGAG-----CgGUCGUGUGUCG--------------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 74366 0.68 0.718298
Target:  5'- gGGCgUCGCgCAGuCGCGCAGCaUGuCGGc -3'
miRNA:   3'- aCCGgAGCG-GUC-GUGUGUCG-AC-GUCa -5'
13934 5' -59.7 NC_003521.1 + 138346 0.68 0.70866
Target:  5'- cGGCCUgggaggGCCAGCGCcuCAGCUGUc-- -3'
miRNA:   3'- aCCGGAg-----CGGUCGUGu-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 105897 0.68 0.698961
Target:  5'- gGGCUUcacgcacaCGCCcgAGCACGCccuGCUGCAGc -3'
miRNA:   3'- aCCGGA--------GCGG--UCGUGUGu--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 201533 0.68 0.698961
Target:  5'- gUGGCCccgaCGCCGGC-CAUcuGGCUGCGc- -3'
miRNA:   3'- -ACCGGa---GCGGUCGuGUG--UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 235227 0.68 0.698961
Target:  5'- aGGCCUCGUUGGUcCGCAGgCUGgAGc -3'
miRNA:   3'- aCCGGAGCGGUCGuGUGUC-GACgUCa -5'
13934 5' -59.7 NC_003521.1 + 117422 0.68 0.68921
Target:  5'- aGGCUUggagggaGCCGGCGCgcuGCGGCgugGCGGUg -3'
miRNA:   3'- aCCGGAg------CGGUCGUG---UGUCGa--CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 54410 0.68 0.679415
Target:  5'- cGGCCUcuccaaCGCCGGCGguaGCAGCaUGCAc- -3'
miRNA:   3'- aCCGGA------GCGGUCGUg--UGUCG-ACGUca -5'
13934 5' -59.7 NC_003521.1 + 65781 0.68 0.679415
Target:  5'- cGGCgUCGcCCAGCugACAGC-GCu-- -3'
miRNA:   3'- aCCGgAGC-GGUCGugUGUCGaCGuca -5'
13934 5' -59.7 NC_003521.1 + 181313 0.67 0.782472
Target:  5'- aGGCCgcccgcggGCCAGgGCGCcgucugguucuguAGCUGCAGc -3'
miRNA:   3'- aCCGGag------CGGUCgUGUG-------------UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 143977 0.67 0.737359
Target:  5'- cGGCCUucCGCCc-CAUGCcGCUGCAGa -3'
miRNA:   3'- aCCGGA--GCGGucGUGUGuCGACGUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.