miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 226622 0.69 0.659723
Target:  5'- gGGgCUCGCCgcAGCACAcCAGCUugcucGCGGc -3'
miRNA:   3'- aCCgGAGCGG--UCGUGU-GUCGA-----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 183869 0.69 0.659723
Target:  5'- -aGUCUCGCCAaCACGuuacucggcauCAGCUGCAGa -3'
miRNA:   3'- acCGGAGCGGUcGUGU-----------GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 218804 0.69 0.663669
Target:  5'- cGGCCUCGCCuGGCAgcucuccugcaccuuCACGGuCUGCc-- -3'
miRNA:   3'- aCCGGAGCGG-UCGU---------------GUGUC-GACGuca -5'
13934 5' -59.7 NC_003521.1 + 27100 0.69 0.669583
Target:  5'- aGGCuCUCGaCGGCGCGCAgGCcggUGCGGg -3'
miRNA:   3'- aCCG-GAGCgGUCGUGUGU-CG---ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 216527 0.69 0.669583
Target:  5'- aGGaCCUCgaaucgcucgaGCCAGCACAguGCaGCGGc -3'
miRNA:   3'- aCC-GGAG-----------CGGUCGUGUguCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 130048 0.69 0.669583
Target:  5'- cGGCCUCGgC-GCGCACGuGC-GCGGg -3'
miRNA:   3'- aCCGGAGCgGuCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 52970 0.69 0.669583
Target:  5'- cGGgCUCacuuuCUAGCGCGCGGaCUGCAGa -3'
miRNA:   3'- aCCgGAGc----GGUCGUGUGUC-GACGUCa -5'
13934 5' -59.7 NC_003521.1 + 87643 0.69 0.669583
Target:  5'- aGGCCUCGCacaGGCuggagGCGCAGCccacgaUGUGGUu -3'
miRNA:   3'- aCCGGAGCGg--UCG-----UGUGUCG------ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 172578 0.68 0.679415
Target:  5'- aGGCCUgCGCCAGCGgCGucaaGGCUGUguGGg -3'
miRNA:   3'- aCCGGA-GCGGUCGU-GUg---UCGACG--UCa -5'
13934 5' -59.7 NC_003521.1 + 213852 0.68 0.679415
Target:  5'- cUGGUCaUCGCCGGCugcuacgugGCGCuGCUGuCGGUc -3'
miRNA:   3'- -ACCGG-AGCGGUCG---------UGUGuCGAC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 65781 0.68 0.679415
Target:  5'- cGGCgUCGcCCAGCugACAGC-GCu-- -3'
miRNA:   3'- aCCGgAGC-GGUCGugUGUCGaCGuca -5'
13934 5' -59.7 NC_003521.1 + 54410 0.68 0.679415
Target:  5'- cGGCCUcuccaaCGCCGGCGguaGCAGCaUGCAc- -3'
miRNA:   3'- aCCGGA------GCGGUCGUg--UGUCG-ACGUca -5'
13934 5' -59.7 NC_003521.1 + 111718 0.68 0.688233
Target:  5'- aGuCCgugCGCCGGCACgccacccACAGCcUGCAGUa -3'
miRNA:   3'- aCcGGa--GCGGUCGUG-------UGUCG-ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 117422 0.68 0.68921
Target:  5'- aGGCUUggagggaGCCGGCGCgcuGCGGCgugGCGGUg -3'
miRNA:   3'- aCCGGAg------CGGUCGUG---UGUCGa--CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 118905 0.68 0.68921
Target:  5'- aGGuCCUCGCCcucgucGGCGcCGCGGCguggGCGGc -3'
miRNA:   3'- aCC-GGAGCGG------UCGU-GUGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 144290 0.68 0.68921
Target:  5'- cGGCgaCUCGCUGcugccGCACGC-GCUGCGGUu -3'
miRNA:   3'- aCCG--GAGCGGU-----CGUGUGuCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 30222 0.68 0.68921
Target:  5'- cGGCCggcCGUUGGCGuCGC-GCUGCAGg -3'
miRNA:   3'- aCCGGa--GCGGUCGU-GUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 201533 0.68 0.698961
Target:  5'- gUGGCCccgaCGCCGGC-CAUcuGGCUGCGc- -3'
miRNA:   3'- -ACCGGa---GCGGUCGuGUG--UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 235227 0.68 0.698961
Target:  5'- aGGCCUCGUUGGUcCGCAGgCUGgAGc -3'
miRNA:   3'- aCCGGAGCGGUCGuGUGUC-GACgUCa -5'
13934 5' -59.7 NC_003521.1 + 220796 0.68 0.698961
Target:  5'- nUGGaUCUCGCCGGCGCcauGCAGCacCAGg -3'
miRNA:   3'- -ACC-GGAGCGGUCGUG---UGUCGacGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.