miRNA display CGI


Results 101 - 120 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 220796 0.68 0.698961
Target:  5'- nUGGaUCUCGCCGGCGCcauGCAGCacCAGg -3'
miRNA:   3'- -ACC-GGAGCGGUCGUG---UGUCGacGUCa -5'
13934 5' -59.7 NC_003521.1 + 239782 0.68 0.698962
Target:  5'- gUGGCCccgaCGCCGGC-CAUcuGGCUGCGc- -3'
miRNA:   3'- -ACCGGa---GCGGUCGuGUG--UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 224862 0.68 0.707693
Target:  5'- aGGCCguagcgcgccagcUCGUCcaggugcuuGGCGCACAGCaGCAGa -3'
miRNA:   3'- aCCGG-------------AGCGG---------UCGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 138346 0.68 0.70866
Target:  5'- cGGCCUgggaggGCCAGCGCcuCAGCUGUc-- -3'
miRNA:   3'- aCCGGAg-----CGGUCGUGu-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 223120 0.68 0.708661
Target:  5'- cGGCCgucUCGCgCAGCAC-CAGgaGcCAGUu -3'
miRNA:   3'- aCCGG---AGCG-GUCGUGuGUCgaC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 213713 0.68 0.717337
Target:  5'- gGGCCUCGgggaugcCCAGcCAgACGGCgccGCAGa -3'
miRNA:   3'- aCCGGAGC-------GGUC-GUgUGUCGa--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 109878 0.68 0.718298
Target:  5'- aGGCCUUGCguGCcaucucCACGGC-GCGGg -3'
miRNA:   3'- aCCGGAGCGguCGu-----GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 167573 0.68 0.718298
Target:  5'- cGGCgCUCGUCGuCACGCcGCUGCuGUu -3'
miRNA:   3'- aCCG-GAGCGGUcGUGUGuCGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 74366 0.68 0.718298
Target:  5'- gGGCgUCGCgCAGuCGCGCAGCaUGuCGGc -3'
miRNA:   3'- aCCGgAGCG-GUC-GUGUGUCG-AC-GUCa -5'
13934 5' -59.7 NC_003521.1 + 102644 0.68 0.718298
Target:  5'- gGGCCUCGUCcGUgaaGCGGCUGuCGGg -3'
miRNA:   3'- aCCGGAGCGGuCGug-UGUCGAC-GUCa -5'
13934 5' -59.7 NC_003521.1 + 132554 0.68 0.725004
Target:  5'- uUGGCCUCcacguGgCGGCACACGGUcaagagguuggcguUGCGGc -3'
miRNA:   3'- -ACCGGAG-----CgGUCGUGUGUCG--------------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 219431 0.68 0.726914
Target:  5'- gGGCCguaucccagCGCUcGCACAgcucgguCAGCUGCGGc -3'
miRNA:   3'- aCCGGa--------GCGGuCGUGU-------GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 187590 0.68 0.727867
Target:  5'- gGGCUUCGCCGGCGguCGCuucGCccGCGGa -3'
miRNA:   3'- aCCGGAGCGGUCGU--GUGu--CGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 166302 0.68 0.727867
Target:  5'- gUGGCCUCGUU-GCGUACGGCcaGCAGg -3'
miRNA:   3'- -ACCGGAGCGGuCGUGUGUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 109508 0.68 0.727867
Target:  5'- gUGGUCgCGCCGGC-CGCuGCUcgaGCAGg -3'
miRNA:   3'- -ACCGGaGCGGUCGuGUGuCGA---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 145252 0.68 0.727867
Target:  5'- aGGCCUCGgUGGCAUGCcGCUGgcuCAGg -3'
miRNA:   3'- aCCGGAGCgGUCGUGUGuCGAC---GUCa -5'
13934 5' -59.7 NC_003521.1 + 150763 0.68 0.727867
Target:  5'- gGGCCcCGCCGGCGCcguaaaAGCUGaAGg -3'
miRNA:   3'- aCCGGaGCGGUCGUGug----UCGACgUCa -5'
13934 5' -59.7 NC_003521.1 + 223732 0.68 0.727867
Target:  5'- gGGCCgugaCGCCGGCGCgGCGGCc-CAGa -3'
miRNA:   3'- aCCGGa---GCGGUCGUG-UGUCGacGUCa -5'
13934 5' -59.7 NC_003521.1 + 103757 0.67 0.736413
Target:  5'- gGGCUcgcccuuUCGCCAGCGCgu-GCcGCAGUu -3'
miRNA:   3'- aCCGG-------AGCGGUCGUGuguCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 197026 0.67 0.737358
Target:  5'- cGGUCgCGCCGGC-CGgGGCaGCAGa -3'
miRNA:   3'- aCCGGaGCGGUCGuGUgUCGaCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.