miRNA display CGI


Results 121 - 140 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 27100 0.69 0.669583
Target:  5'- aGGCuCUCGaCGGCGCGCAgGCcggUGCGGg -3'
miRNA:   3'- aCCG-GAGCgGUCGUGUGU-CG---ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 87643 0.69 0.669583
Target:  5'- aGGCCUCGCacaGGCuggagGCGCAGCccacgaUGUGGUu -3'
miRNA:   3'- aCCGGAGCGg--UCG-----UGUGUCG------ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 130048 0.69 0.669583
Target:  5'- cGGCCUCGgC-GCGCACGuGC-GCGGg -3'
miRNA:   3'- aCCGGAGCgGuCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 52970 0.69 0.669583
Target:  5'- cGGgCUCacuuuCUAGCGCGCGGaCUGCAGa -3'
miRNA:   3'- aCCgGAGc----GGUCGUGUGUC-GACGUCa -5'
13934 5' -59.7 NC_003521.1 + 218804 0.69 0.663669
Target:  5'- cGGCCUCGCCuGGCAgcucuccugcaccuuCACGGuCUGCc-- -3'
miRNA:   3'- aCCGGAGCGG-UCGU---------------GUGUC-GACGuca -5'
13934 5' -59.7 NC_003521.1 + 98395 0.69 0.659723
Target:  5'- aGGCUUCGgCGGCGCu--GCUGCuGUu -3'
miRNA:   3'- aCCGGAGCgGUCGUGuguCGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 183869 0.69 0.659723
Target:  5'- -aGUCUCGCCAaCACGuuacucggcauCAGCUGCAGa -3'
miRNA:   3'- acCGGAGCGGUcGUGU-----------GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 226622 0.69 0.659723
Target:  5'- gGGgCUCGCCgcAGCACAcCAGCUugcucGCGGc -3'
miRNA:   3'- aCCgGAGCGG--UCGUGU-GUCGA-----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 201668 0.69 0.659723
Target:  5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3'
miRNA:   3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 103566 0.69 0.659723
Target:  5'- gGGCCcaggUCGCCcGCGCAgaAGCUGCGc- -3'
miRNA:   3'- aCCGG----AGCGGuCGUGUg-UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 28401 0.69 0.659722
Target:  5'- -cGCCgUCGCCAGgGCAaGGCUGguGg -3'
miRNA:   3'- acCGG-AGCGGUCgUGUgUCGACguCa -5'
13934 5' -59.7 NC_003521.1 + 60278 0.69 0.659722
Target:  5'- aGGCCggUGCUGuCGCGCuGCUGCAGg -3'
miRNA:   3'- aCCGGa-GCGGUcGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 149200 0.69 0.659722
Target:  5'- -aGCacacgCGCCAGCACGgcGCUGCGGUg -3'
miRNA:   3'- acCGga---GCGGUCGUGUguCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 239647 0.69 0.659722
Target:  5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3'
miRNA:   3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 29461 0.69 0.659722
Target:  5'- aGGUaCUCGUugcgCAGCGaggGCAGCUGCAGg -3'
miRNA:   3'- aCCG-GAGCG----GUCGUg--UGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 130266 0.69 0.649841
Target:  5'- cGGCCguugcgCGCCGccGCcgGCGCAGCgGCAGc -3'
miRNA:   3'- aCCGGa-----GCGGU--CG--UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 136919 0.69 0.649841
Target:  5'- cGGCggCGCgGGuCGCACGGCguUGCGGUa -3'
miRNA:   3'- aCCGgaGCGgUC-GUGUGUCG--ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 143826 0.69 0.649841
Target:  5'- cGuGCC-CGCCAGCGaugGCGGCUGCu-- -3'
miRNA:   3'- aC-CGGaGCGGUCGUg--UGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 63419 0.69 0.649841
Target:  5'- cGGCgcgucgaUCGUCAGCccGCGCAGCUGCu-- -3'
miRNA:   3'- aCCGg------AGCGGUCG--UGUGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 223922 0.69 0.639947
Target:  5'- aGGCCgaggCGCagcGCugGCAGCUggGCAGg -3'
miRNA:   3'- aCCGGa---GCGgu-CGugUGUCGA--CGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.