miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 102644 0.68 0.718298
Target:  5'- gGGCCUCGUCcGUgaaGCGGCUGuCGGg -3'
miRNA:   3'- aCCGGAGCGGuCGug-UGUCGAC-GUCa -5'
13934 5' -59.7 NC_003521.1 + 103566 0.69 0.659723
Target:  5'- gGGCCcaggUCGCCcGCGCAgaAGCUGCGc- -3'
miRNA:   3'- aCCGG----AGCGGuCGUGUg-UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 103757 0.67 0.736413
Target:  5'- gGGCUcgcccuuUCGCCAGCGCgu-GCcGCAGUu -3'
miRNA:   3'- aCCGG-------AGCGGUCGUGuguCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 104061 0.67 0.774385
Target:  5'- cGGUcauCUCGCCGGaGCACGGCgGCGa- -3'
miRNA:   3'- aCCG---GAGCGGUCgUGUGUCGaCGUca -5'
13934 5' -59.7 NC_003521.1 + 104503 0.69 0.630047
Target:  5'- aGGCCugcagcUCGCgCAGCuccacguccucGCugGGCUGCAGc -3'
miRNA:   3'- aCCGG------AGCG-GUCG-----------UGugUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 105852 0.71 0.513218
Target:  5'- cGGCUgCGCCGGCggcggcgacgACACGGCgGCGGa -3'
miRNA:   3'- aCCGGaGCGGUCG----------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 105897 0.68 0.698961
Target:  5'- gGGCUUcacgcacaCGCCcgAGCACGCccuGCUGCAGc -3'
miRNA:   3'- aCCGGA--------GCGG--UCGUGUGu--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 106693 0.66 0.800935
Target:  5'- gUGcGCUUCGCCAGCgACACGGaCUuuCAGa -3'
miRNA:   3'- -AC-CGGAGCGGUCG-UGUGUC-GAc-GUCa -5'
13934 5' -59.7 NC_003521.1 + 108930 0.72 0.458053
Target:  5'- aUGGCCaUCaUCAGUGCGCGGCUGuCGGUg -3'
miRNA:   3'- -ACCGG-AGcGGUCGUGUGUCGAC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 109387 0.66 0.797465
Target:  5'- aGGCCaggucgcggaaggCGCUcagGGUGCGCGGCUGCAu- -3'
miRNA:   3'- aCCGGa------------GCGG---UCGUGUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 109508 0.68 0.727867
Target:  5'- gUGGUCgCGCCGGC-CGCuGCUcgaGCAGg -3'
miRNA:   3'- -ACCGGaGCGGUCGuGUGuCGA---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 109878 0.68 0.718298
Target:  5'- aGGCCUUGCguGCcaucucCACGGC-GCGGg -3'
miRNA:   3'- aCCGGAGCGguCGu-----GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 110027 0.69 0.630047
Target:  5'- cGGCuCUCGUgGGCGC---GCUGCGGUg -3'
miRNA:   3'- aCCG-GAGCGgUCGUGuguCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 111718 0.68 0.688233
Target:  5'- aGuCCgugCGCCGGCACgccacccACAGCcUGCAGUa -3'
miRNA:   3'- aCcGGa--GCGGUCGUG-------UGUCG-ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 111979 0.66 0.8262
Target:  5'- gUGGCg-UGCCGGCGCACGGaCUGgAcGUc -3'
miRNA:   3'- -ACCGgaGCGGUCGUGUGUC-GACgU-CA- -5'
13934 5' -59.7 NC_003521.1 + 113143 0.66 0.825381
Target:  5'- cGGCUgacgucgUCgGCCAGC-CGCGGgaGCAGc -3'
miRNA:   3'- aCCGG-------AG-CGGUCGuGUGUCgaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 113983 0.7 0.561167
Target:  5'- cGGCCg-GCCgGGCAC-CGGCUGCAa- -3'
miRNA:   3'- aCCGGagCGG-UCGUGuGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 115415 0.66 0.792217
Target:  5'- cGGCCUCcggacUCAGCGcCGCGGC-GCGGg -3'
miRNA:   3'- aCCGGAGc----GGUCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 116584 0.65 0.833499
Target:  5'- cUGGUCUCGCgCGGCccucccuGCAagucGCUGCGGc -3'
miRNA:   3'- -ACCGGAGCG-GUCG-------UGUgu--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 117053 0.67 0.746765
Target:  5'- cGGCCguagacgGCCAGCGugcCGCGGCgGCGGc -3'
miRNA:   3'- aCCGGag-----CGGUCGU---GUGUCGaCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.