miRNA display CGI


Results 121 - 140 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 136861 0.66 0.792217
Target:  5'- gGGCCUgCGCUgucccgacaAGCGCAUcucgGGCUcGCAGa -3'
miRNA:   3'- aCCGGA-GCGG---------UCGUGUG----UCGA-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 136919 0.69 0.649841
Target:  5'- cGGCggCGCgGGuCGCACGGCguUGCGGUa -3'
miRNA:   3'- aCCGgaGCGgUC-GUGUGUCG--ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 137271 0.67 0.774385
Target:  5'- gGGCCUCgGCCAGCuCGC-GCUGa--- -3'
miRNA:   3'- aCCGGAG-CGGUCGuGUGuCGACguca -5'
13934 5' -59.7 NC_003521.1 + 138027 0.66 0.792217
Target:  5'- cGuGCgUCgcuGCCGGCGCACggGGCUGUGGg -3'
miRNA:   3'- aC-CGgAG---CGGUCGUGUG--UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 138346 0.68 0.70866
Target:  5'- cGGCCUgggaggGCCAGCGCcuCAGCUGUc-- -3'
miRNA:   3'- aCCGGAg-----CGGUCGUGu-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 141386 0.69 0.630047
Target:  5'- aGGUgUCGCgGGCGCAgaAGCUGCGc- -3'
miRNA:   3'- aCCGgAGCGgUCGUGUg-UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 141999 0.67 0.737359
Target:  5'- cUGGCCcgCGCCAa---GCAGCUGCAa- -3'
miRNA:   3'- -ACCGGa-GCGGUcgugUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 142589 0.71 0.536048
Target:  5'- cGGCCUCGCgCAcccaguugcgacgacGCGCGCGGCUgggccgcuGCAGc -3'
miRNA:   3'- aCCGGAGCG-GU---------------CGUGUGUCGA--------CGUCa -5'
13934 5' -59.7 NC_003521.1 + 142651 0.67 0.765286
Target:  5'- cGGCCUCagcgGUCGGCGCagcgccgucaGCAGCgacgGCGGc -3'
miRNA:   3'- aCCGGAG----CGGUCGUG----------UGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 142918 0.67 0.783365
Target:  5'- cGGCgaCGUCGGCGuugcaGCAGCgGCGGUc -3'
miRNA:   3'- aCCGgaGCGGUCGUg----UGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 143826 0.69 0.649841
Target:  5'- cGuGCC-CGCCAGCGaugGCGGCUGCu-- -3'
miRNA:   3'- aC-CGGaGCGGUCGUg--UGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 143977 0.67 0.737359
Target:  5'- cGGCCUucCGCCc-CAUGCcGCUGCAGa -3'
miRNA:   3'- aCCGGA--GCGGucGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 143984 0.67 0.737358
Target:  5'- aUGGCgUCgGCCAGCgugcagaagGCGCGGCgGUAGc -3'
miRNA:   3'- -ACCGgAG-CGGUCG---------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 144290 0.68 0.68921
Target:  5'- cGGCgaCUCGCUGcugccGCACGC-GCUGCGGUu -3'
miRNA:   3'- aCCG--GAGCGGU-----CGUGUGuCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 144478 0.78 0.228108
Target:  5'- aGGCaggCGUCGGCGCACuGCUGCAGc -3'
miRNA:   3'- aCCGga-GCGGUCGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 145252 0.68 0.727867
Target:  5'- aGGCCUCGgUGGCAUGCcGCUGgcuCAGg -3'
miRNA:   3'- aCCGGAGCgGUCGUGUGuCGAC---GUCa -5'
13934 5' -59.7 NC_003521.1 + 145893 0.66 0.8262
Target:  5'- aGGCC--GCCGGCGgcgggaGCAGCgGCGGUu -3'
miRNA:   3'- aCCGGagCGGUCGUg-----UGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 147724 0.66 0.789575
Target:  5'- cGGCCUgucgCGCCAuccgcuacuuccgcGCGCGCAGcCUGUucaAGUa -3'
miRNA:   3'- aCCGGA----GCGGU--------------CGUGUGUC-GACG---UCA- -5'
13934 5' -59.7 NC_003521.1 + 148783 0.71 0.503823
Target:  5'- cGGUCgCGCCgaggAGC-CGCGGCUGCGGa -3'
miRNA:   3'- aCCGGaGCGG----UCGuGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 149049 0.67 0.765286
Target:  5'- aGGCCgUGCCcGCGCugGGCUucgacGCGGc -3'
miRNA:   3'- aCCGGaGCGGuCGUGugUCGA-----CGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.