miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 153628 0.65 0.832694
Target:  5'- gGGCUgUGCCGGCACcagaagaucugcCAGCUGCuGa -3'
miRNA:   3'- aCCGGaGCGGUCGUGu-----------GUCGACGuCa -5'
13934 5' -59.7 NC_003521.1 + 153561 0.74 0.358225
Target:  5'- uUGGCCacgCGCaCGGCGCACAGCcgcuccaccaccUGCAGc -3'
miRNA:   3'- -ACCGGa--GCG-GUCGUGUGUCG------------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 151570 0.67 0.783365
Target:  5'- -cGCCUgGCCGccuuGCGCGCgucggaacccaGGCUGCGGg -3'
miRNA:   3'- acCGGAgCGGU----CGUGUG-----------UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 150973 0.71 0.551464
Target:  5'- cGGCCgagaGCCAGUcgccgccgGCGCAGCaGCAGc -3'
miRNA:   3'- aCCGGag--CGGUCG--------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 150763 0.68 0.727867
Target:  5'- gGGCCcCGCCGGCGCcguaaaAGCUGaAGg -3'
miRNA:   3'- aCCGGaGCGGUCGUGug----UCGACgUCa -5'
13934 5' -59.7 NC_003521.1 + 149485 0.71 0.522684
Target:  5'- cGGCUUCGCCGGacagACGCcGCUGCGc- -3'
miRNA:   3'- aCCGGAGCGGUCg---UGUGuCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 149200 0.69 0.659722
Target:  5'- -aGCacacgCGCCAGCACGgcGCUGCGGUg -3'
miRNA:   3'- acCGga---GCGGUCGUGUguCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 149049 0.67 0.765286
Target:  5'- aGGCCgUGCCcGCGCugGGCUucgacGCGGc -3'
miRNA:   3'- aCCGGaGCGGuCGUGugUCGA-----CGUCa -5'
13934 5' -59.7 NC_003521.1 + 148783 0.71 0.503823
Target:  5'- cGGUCgCGCCgaggAGC-CGCGGCUGCGGa -3'
miRNA:   3'- aCCGGaGCGG----UCGuGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 147724 0.66 0.789575
Target:  5'- cGGCCUgucgCGCCAuccgcuacuuccgcGCGCGCAGcCUGUucaAGUa -3'
miRNA:   3'- aCCGGA----GCGGU--------------CGUGUGUC-GACG---UCA- -5'
13934 5' -59.7 NC_003521.1 + 145893 0.66 0.8262
Target:  5'- aGGCC--GCCGGCGgcgggaGCAGCgGCGGUu -3'
miRNA:   3'- aCCGGagCGGUCGUg-----UGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 145252 0.68 0.727867
Target:  5'- aGGCCUCGgUGGCAUGCcGCUGgcuCAGg -3'
miRNA:   3'- aCCGGAGCgGUCGUGUGuCGAC---GUCa -5'
13934 5' -59.7 NC_003521.1 + 144478 0.78 0.228108
Target:  5'- aGGCaggCGUCGGCGCACuGCUGCAGc -3'
miRNA:   3'- aCCGga-GCGGUCGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 144290 0.68 0.68921
Target:  5'- cGGCgaCUCGCUGcugccGCACGC-GCUGCGGUu -3'
miRNA:   3'- aCCG--GAGCGGU-----CGUGUGuCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 143984 0.67 0.737358
Target:  5'- aUGGCgUCgGCCAGCgugcagaagGCGCGGCgGUAGc -3'
miRNA:   3'- -ACCGgAG-CGGUCG---------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 143977 0.67 0.737359
Target:  5'- cGGCCUucCGCCc-CAUGCcGCUGCAGa -3'
miRNA:   3'- aCCGGA--GCGGucGUGUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 143826 0.69 0.649841
Target:  5'- cGuGCC-CGCCAGCGaugGCGGCUGCu-- -3'
miRNA:   3'- aC-CGGaGCGGUCGUg--UGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 142918 0.67 0.783365
Target:  5'- cGGCgaCGUCGGCGuugcaGCAGCgGCGGUc -3'
miRNA:   3'- aCCGgaGCGGUCGUg----UGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 142651 0.67 0.765286
Target:  5'- cGGCCUCagcgGUCGGCGCagcgccgucaGCAGCgacgGCGGc -3'
miRNA:   3'- aCCGGAG----CGGUCGUG----------UGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 142589 0.71 0.536048
Target:  5'- cGGCCUCGCgCAcccaguugcgacgacGCGCGCGGCUgggccgcuGCAGc -3'
miRNA:   3'- aCCGGAGCG-GU---------------CGUGUGUCGA--------CGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.