miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 141999 0.67 0.737359
Target:  5'- cUGGCCcgCGCCAa---GCAGCUGCAa- -3'
miRNA:   3'- -ACCGGa-GCGGUcgugUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 141386 0.69 0.630047
Target:  5'- aGGUgUCGCgGGCGCAgaAGCUGCGc- -3'
miRNA:   3'- aCCGgAGCGgUCGUGUg-UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 138346 0.68 0.70866
Target:  5'- cGGCCUgggaggGCCAGCGCcuCAGCUGUc-- -3'
miRNA:   3'- aCCGGAg-----CGGUCGUGu-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 138027 0.66 0.792217
Target:  5'- cGuGCgUCgcuGCCGGCGCACggGGCUGUGGg -3'
miRNA:   3'- aC-CGgAG---CGGUCGUGUG--UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 137271 0.67 0.774385
Target:  5'- gGGCCUCgGCCAGCuCGC-GCUGa--- -3'
miRNA:   3'- aCCGGAG-CGGUCGuGUGuCGACguca -5'
13934 5' -59.7 NC_003521.1 + 136919 0.69 0.649841
Target:  5'- cGGCggCGCgGGuCGCACGGCguUGCGGUa -3'
miRNA:   3'- aCCGgaGCGgUC-GUGUGUCG--ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 136861 0.66 0.792217
Target:  5'- gGGCCUgCGCUgucccgacaAGCGCAUcucgGGCUcGCAGa -3'
miRNA:   3'- aCCGGA-GCGG---------UCGUGUG----UCGA-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 135220 0.67 0.765286
Target:  5'- gGGCCUCGUC--CAC-CAGCaGCAGg -3'
miRNA:   3'- aCCGGAGCGGucGUGuGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 133374 0.7 0.600384
Target:  5'- cGGUC-CGCCGGCACAgcGCgGCGGUc -3'
miRNA:   3'- aCCGGaGCGGUCGUGUguCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 132554 0.68 0.725004
Target:  5'- uUGGCCUCcacguGgCGGCACACGGUcaagagguuggcguUGCGGc -3'
miRNA:   3'- -ACCGGAG-----CgGUCGUGUGUCG--------------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 131472 0.73 0.397942
Target:  5'- cGGCCUCGUCGGCcuccuGCGcCGGCUGCu-- -3'
miRNA:   3'- aCCGGAGCGGUCG-----UGU-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 130266 0.69 0.649841
Target:  5'- cGGCCguugcgCGCCGccGCcgGCGCAGCgGCAGc -3'
miRNA:   3'- aCCGGa-----GCGGU--CG--UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 130048 0.69 0.669583
Target:  5'- cGGCCUCGgC-GCGCACGuGC-GCGGg -3'
miRNA:   3'- aCCGGAGCgGuCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 129982 0.66 0.8262
Target:  5'- cGGCgUCGaCgGGC-CGCGGCcgGCAGa -3'
miRNA:   3'- aCCGgAGC-GgUCGuGUGUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 127274 0.66 0.817934
Target:  5'- cGGCgUCGUCgGGCACcgccacgucggGCAGCgGCAGc -3'
miRNA:   3'- aCCGgAGCGG-UCGUG-----------UGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 127027 0.7 0.600383
Target:  5'- gGGCCU-GCCGGacuuCACGucGCUGCAGUu -3'
miRNA:   3'- aCCGGAgCGGUCgu--GUGU--CGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 126701 0.66 0.80951
Target:  5'- aGaUCUCGCCGGUGuCGCugguGCUGCAGa -3'
miRNA:   3'- aCcGGAGCGGUCGU-GUGu---CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 124454 0.66 0.792217
Target:  5'- gGGCCgCGgCGGCACGCGuucgccgccgcGCUcGCGGUc -3'
miRNA:   3'- aCCGGaGCgGUCGUGUGU-----------CGA-CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 124425 0.69 0.639947
Target:  5'- aGGCgcuaUCGCCuGCACGgCAGCggcgGCGGa -3'
miRNA:   3'- aCCGg---AGCGGuCGUGU-GUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 122678 0.71 0.551464
Target:  5'- aGGCg-C-CCAGCACcgACAGCUGCGGg -3'
miRNA:   3'- aCCGgaGcGGUCGUG--UGUCGACGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.