miRNA display CGI


Results 101 - 120 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 122495 0.66 0.800935
Target:  5'- cGGCgCucagUCGCCGGCACcCGcGCUcGCAGg -3'
miRNA:   3'- aCCG-G----AGCGGUCGUGuGU-CGA-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 121211 0.74 0.389775
Target:  5'- cGGUCUCGCgCagGGCGCGCAGCUcCAGg -3'
miRNA:   3'- aCCGGAGCG-G--UCGUGUGUCGAcGUCa -5'
13934 5' -59.7 NC_003521.1 + 119158 0.71 0.532218
Target:  5'- cGGcCCUCcgaggaaacagGCCGGCGCGCAGCUGgAu- -3'
miRNA:   3'- aCC-GGAG-----------CGGUCGUGUGUCGACgUca -5'
13934 5' -59.7 NC_003521.1 + 118905 0.68 0.68921
Target:  5'- aGGuCCUCGCCcucgucGGCGcCGCGGCguggGCGGc -3'
miRNA:   3'- aCC-GGAGCGG------UCGU-GUGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 118269 0.7 0.600384
Target:  5'- cGGUa--GCCGGCAC-CAGCgGCGGUa -3'
miRNA:   3'- aCCGgagCGGUCGUGuGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 117422 0.68 0.68921
Target:  5'- aGGCUUggagggaGCCGGCGCgcuGCGGCgugGCGGUg -3'
miRNA:   3'- aCCGGAg------CGGUCGUG---UGUCGa--CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 117158 0.72 0.476104
Target:  5'- gGGUCUccCGCCGGCGCGCcGCcGCAGc -3'
miRNA:   3'- aCCGGA--GCGGUCGUGUGuCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 117053 0.67 0.746765
Target:  5'- cGGCCguagacgGCCAGCGugcCGCGGCgGCGGc -3'
miRNA:   3'- aCCGGag-----CGGUCGU---GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 116584 0.65 0.833499
Target:  5'- cUGGUCUCGCgCGGCccucccuGCAagucGCUGCGGc -3'
miRNA:   3'- -ACCGGAGCG-GUCG-------UGUgu--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 115415 0.66 0.792217
Target:  5'- cGGCCUCcggacUCAGCGcCGCGGC-GCGGg -3'
miRNA:   3'- aCCGGAGc----GGUCGU-GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 113983 0.7 0.561167
Target:  5'- cGGCCg-GCCgGGCAC-CGGCUGCAa- -3'
miRNA:   3'- aCCGGagCGG-UCGUGuGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 113143 0.66 0.825381
Target:  5'- cGGCUgacgucgUCgGCCAGC-CGCGGgaGCAGc -3'
miRNA:   3'- aCCGG-------AG-CGGUCGuGUGUCgaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 111979 0.66 0.8262
Target:  5'- gUGGCg-UGCCGGCGCACGGaCUGgAcGUc -3'
miRNA:   3'- -ACCGgaGCGGUCGUGUGUC-GACgU-CA- -5'
13934 5' -59.7 NC_003521.1 + 111718 0.68 0.688233
Target:  5'- aGuCCgugCGCCGGCACgccacccACAGCcUGCAGUa -3'
miRNA:   3'- aCcGGa--GCGGUCGUG-------UGUCG-ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 110027 0.69 0.630047
Target:  5'- cGGCuCUCGUgGGCGC---GCUGCGGUg -3'
miRNA:   3'- aCCG-GAGCGgUCGUGuguCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 109878 0.68 0.718298
Target:  5'- aGGCCUUGCguGCcaucucCACGGC-GCGGg -3'
miRNA:   3'- aCCGGAGCGguCGu-----GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 109508 0.68 0.727867
Target:  5'- gUGGUCgCGCCGGC-CGCuGCUcgaGCAGg -3'
miRNA:   3'- -ACCGGaGCGGUCGuGUGuCGA---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 109387 0.66 0.797465
Target:  5'- aGGCCaggucgcggaaggCGCUcagGGUGCGCGGCUGCAu- -3'
miRNA:   3'- aCCGGa------------GCGG---UCGUGUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 108930 0.72 0.458053
Target:  5'- aUGGCCaUCaUCAGUGCGCGGCUGuCGGUg -3'
miRNA:   3'- -ACCGG-AGcGGUCGUGUGUCGAC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 106693 0.66 0.800935
Target:  5'- gUGcGCUUCGCCAGCgACACGGaCUuuCAGa -3'
miRNA:   3'- -AC-CGGAGCGGUCG-UGUGUC-GAc-GUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.