Results 81 - 100 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13934 | 5' | -59.7 | NC_003521.1 | + | 110027 | 0.69 | 0.630047 |
Target: 5'- cGGCuCUCGUgGGCGC---GCUGCGGUg -3' miRNA: 3'- aCCG-GAGCGgUCGUGuguCGACGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 183869 | 0.69 | 0.659723 |
Target: 5'- -aGUCUCGCCAaCACGuuacucggcauCAGCUGCAGa -3' miRNA: 3'- acCGGAGCGGUcGUGU-----------GUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 226622 | 0.69 | 0.659723 |
Target: 5'- gGGgCUCGCCgcAGCACAcCAGCUugcucGCGGc -3' miRNA: 3'- aCCgGAGCGG--UCGUGU-GUCGA-----CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 98395 | 0.69 | 0.659723 |
Target: 5'- aGGCUUCGgCGGCGCu--GCUGCuGUu -3' miRNA: 3'- aCCGGAGCgGUCGUGuguCGACGuCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 201668 | 0.69 | 0.659723 |
Target: 5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3' miRNA: 3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 103566 | 0.69 | 0.659723 |
Target: 5'- gGGCCcaggUCGCCcGCGCAgaAGCUGCGc- -3' miRNA: 3'- aCCGG----AGCGGuCGUGUg-UCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 216527 | 0.69 | 0.669583 |
Target: 5'- aGGaCCUCgaaucgcucgaGCCAGCACAguGCaGCGGc -3' miRNA: 3'- aCC-GGAG-----------CGGUCGUGUguCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 226164 | 0.69 | 0.617181 |
Target: 5'- cGGCgUCGuUCAGCGCGCAGaagggccagacgcaCUGCAGc -3' miRNA: 3'- aCCGgAGC-GGUCGUGUGUC--------------GACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 74612 | 0.7 | 0.610259 |
Target: 5'- cGcGCCUCGCCGccGCGCcaACAGCgggGUGGUg -3' miRNA: 3'- aC-CGGAGCGGU--CGUG--UGUCGa--CGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 59619 | 0.7 | 0.610259 |
Target: 5'- cGGCCcCGgCGGCGacCGCGGCUcGCAGg -3' miRNA: 3'- aCCGGaGCgGUCGU--GUGUCGA-CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 113983 | 0.7 | 0.561167 |
Target: 5'- cGGCCg-GCCgGGCAC-CGGCUGCAa- -3' miRNA: 3'- aCCGGagCGG-UCGUGuGUCGACGUca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 168520 | 0.7 | 0.579726 |
Target: 5'- cGGCgaCGCCAGCaggcuggcggccaGCGCGGCgGCGGc -3' miRNA: 3'- aCCGgaGCGGUCG-------------UGUGUCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 154875 | 0.7 | 0.590531 |
Target: 5'- cGGCCUCauGCU-GCGCuACAuGCUGCAGg -3' miRNA: 3'- aCCGGAG--CGGuCGUG-UGU-CGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 56072 | 0.7 | 0.600384 |
Target: 5'- cGGCCUCcgucaCCAGCucGCGCAGCacgcGCAGa -3' miRNA: 3'- aCCGGAGc----GGUCG--UGUGUCGa---CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 133374 | 0.7 | 0.600384 |
Target: 5'- cGGUC-CGCCGGCACAgcGCgGCGGUc -3' miRNA: 3'- aCCGGaGCGGUCGUGUguCGaCGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 196048 | 0.7 | 0.600384 |
Target: 5'- cGGCCUaggGCCAGCAC-CGGCcgccuuccGCGGUc -3' miRNA: 3'- aCCGGAg--CGGUCGUGuGUCGa-------CGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 206 | 0.7 | 0.600384 |
Target: 5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3' miRNA: 3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 118269 | 0.7 | 0.600384 |
Target: 5'- cGGUa--GCCGGCAC-CAGCgGCGGUa -3' miRNA: 3'- aCCGgagCGGUCGUGuGUCGaCGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 240755 | 0.7 | 0.600384 |
Target: 5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3' miRNA: 3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 27100 | 0.69 | 0.669583 |
Target: 5'- aGGCuCUCGaCGGCGCGCAgGCcggUGCGGg -3' miRNA: 3'- aCCG-GAGCgGUCGUGUGU-CG---ACGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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