Results 101 - 120 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13934 | 5' | -59.7 | NC_003521.1 | + | 206 | 0.7 | 0.600384 |
Target: 5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3' miRNA: 3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 118269 | 0.7 | 0.600384 |
Target: 5'- cGGUa--GCCGGCAC-CAGCgGCGGUa -3' miRNA: 3'- aCCGgagCGGUCGUGuGUCGaCGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 240755 | 0.7 | 0.600384 |
Target: 5'- cGGCC-CGCC-GCACGCcGCcGCGGa -3' miRNA: 3'- aCCGGaGCGGuCGUGUGuCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 59619 | 0.7 | 0.610259 |
Target: 5'- cGGCCcCGgCGGCGacCGCGGCUcGCAGg -3' miRNA: 3'- aCCGGaGCgGUCGU--GUGUCGA-CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 74612 | 0.7 | 0.610259 |
Target: 5'- cGcGCCUCGCCGccGCGCcaACAGCgggGUGGUg -3' miRNA: 3'- aC-CGGAGCGGU--CGUG--UGUCGa--CGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 226164 | 0.69 | 0.617181 |
Target: 5'- cGGCgUCGuUCAGCGCGCAGaagggccagacgcaCUGCAGc -3' miRNA: 3'- aCCGgAGC-GGUCGUGUGUC--------------GACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 154913 | 0.71 | 0.532217 |
Target: 5'- cGGCCUCgGCCAGCGgCACGuGCUuGCuGa -3' miRNA: 3'- aCCGGAG-CGGUCGU-GUGU-CGA-CGuCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 142589 | 0.71 | 0.536048 |
Target: 5'- cGGCCUCGCgCAcccaguugcgacgacGCGCGCGGCUgggccgcuGCAGc -3' miRNA: 3'- aCCGGAGCG-GU---------------CGUGUGUCGA--------CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 191886 | 0.71 | 0.541812 |
Target: 5'- -cGCUUCGCC-GCGCACAGCaaacaGCAGa -3' miRNA: 3'- acCGGAGCGGuCGUGUGUCGa----CGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 150973 | 0.71 | 0.551464 |
Target: 5'- cGGCCgagaGCCAGUcgccgccgGCGCAGCaGCAGc -3' miRNA: 3'- aCCGGag--CGGUCG--------UGUGUCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 43240 | 0.7 | 0.570916 |
Target: 5'- aGGUCgucggugggCGCCGGCgggucgcgcucGCugGGCUGCAGg -3' miRNA: 3'- aCCGGa--------GCGGUCG-----------UGugUCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 164690 | 0.7 | 0.570916 |
Target: 5'- gUGGCgCU-GCUAGCAC-CAGCgGCGGUg -3' miRNA: 3'- -ACCG-GAgCGGUCGUGuGUCGaCGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 59048 | 0.71 | 0.532217 |
Target: 5'- aUGcGUCgUCGCCGGCGCGCGccgccCUGCAGUg -3' miRNA: 3'- -AC-CGG-AGCGGUCGUGUGUc----GACGUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 105852 | 0.71 | 0.513218 |
Target: 5'- cGGCUgCGCCGGCggcggcgacgACACGGCgGCGGa -3' miRNA: 3'- aCCGGaGCGGUCG----------UGUGUCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 215708 | 0.71 | 0.513218 |
Target: 5'- cGGCCUggCGCCAGCACccGCGGCUcuGCu-- -3' miRNA: 3'- aCCGGA--GCGGUCGUG--UGUCGA--CGuca -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 117158 | 0.72 | 0.476104 |
Target: 5'- gGGUCUccCGCCGGCGCGCcGCcGCAGc -3' miRNA: 3'- aCCGGA--GCGGUCGUGUGuCGaCGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 154745 | 0.72 | 0.476104 |
Target: 5'- aGGUCUUGCCGGCGC-CGGCggUGcCGGUg -3' miRNA: 3'- aCCGGAGCGGUCGUGuGUCG--AC-GUCA- -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 84954 | 0.74 | 0.381718 |
Target: 5'- cGGCCUggagGUguGCACGCAGCUGCuGg -3' miRNA: 3'- aCCGGAg---CGguCGUGUGUCGACGuCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 144478 | 0.78 | 0.228108 |
Target: 5'- aGGCaggCGUCGGCGCACuGCUGCAGc -3' miRNA: 3'- aCCGga-GCGGUCGUGUGuCGACGUCa -5' |
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13934 | 5' | -59.7 | NC_003521.1 | + | 28983 | 0.65 | 0.832694 |
Target: 5'- cGGCgUgCGCCaccaucuGGCGCACGGUcggacucUGCAGg -3' miRNA: 3'- aCCGgA-GCGG-------UCGUGUGUCG-------ACGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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