miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 138346 0.68 0.70866
Target:  5'- cGGCCUgggaggGCCAGCGCcuCAGCUGUc-- -3'
miRNA:   3'- aCCGGAg-----CGGUCGUGu-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 145252 0.68 0.727867
Target:  5'- aGGCCUCGgUGGCAUGCcGCUGgcuCAGg -3'
miRNA:   3'- aCCGGAGCgGUCGUGUGuCGAC---GUCa -5'
13934 5' -59.7 NC_003521.1 + 70930 0.67 0.737358
Target:  5'- cGGUUUU-CCAGCA-GCAGCUGCAGc -3'
miRNA:   3'- aCCGGAGcGGUCGUgUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 75590 0.67 0.746765
Target:  5'- gGGCCgcCGUCAGCaucugggugACGCAGUcGCAGg -3'
miRNA:   3'- aCCGGa-GCGGUCG---------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 73614 0.67 0.765286
Target:  5'- gGGCCgUGCgCGGCGCGUAGUUGCAc- -3'
miRNA:   3'- aCCGGaGCG-GUCGUGUGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 88793 0.67 0.783365
Target:  5'- aGGCCguuucggugCGCCu--GCACGGCUGCgAGUc -3'
miRNA:   3'- aCCGGa--------GCGGucgUGUGUCGACG-UCA- -5'
13934 5' -59.7 NC_003521.1 + 147724 0.66 0.789575
Target:  5'- cGGCCUgucgCGCCAuccgcuacuuccgcGCGCGCAGcCUGUucaAGUa -3'
miRNA:   3'- aCCGGA----GCGGU--------------CGUGUGUC-GACG---UCA- -5'
13934 5' -59.7 NC_003521.1 + 239647 0.69 0.659722
Target:  5'- gGGCCgcgagcugCGCCgccgguggcAGCACACGggcaucccGCUGCAGa -3'
miRNA:   3'- aCCGGa-------GCGG---------UCGUGUGU--------CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 136919 0.69 0.649841
Target:  5'- cGGCggCGCgGGuCGCACGGCguUGCGGUa -3'
miRNA:   3'- aCCGgaGCGgUC-GUGUGUCG--ACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 124425 0.69 0.639947
Target:  5'- aGGCgcuaUCGCCuGCACGgCAGCggcgGCGGa -3'
miRNA:   3'- aCCGg---AGCGGuCGUGU-GUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 126701 0.66 0.80951
Target:  5'- aGaUCUCGCCGGUGuCGCugguGCUGCAGa -3'
miRNA:   3'- aCcGGAGCGGUCGU-GUGu---CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 88130 0.66 0.817934
Target:  5'- cGGCCUgGCCAGCGC-CuGCga-GGa -3'
miRNA:   3'- aCCGGAgCGGUCGUGuGuCGacgUCa -5'
13934 5' -59.7 NC_003521.1 + 113143 0.66 0.825381
Target:  5'- cGGCUgacgucgUCgGCCAGC-CGCGGgaGCAGc -3'
miRNA:   3'- aCCGG-------AG-CGGUCGuGUGUCgaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 111979 0.66 0.8262
Target:  5'- gUGGCg-UGCCGGCGCACGGaCUGgAcGUc -3'
miRNA:   3'- -ACCGgaGCGGUCGUGUGUC-GACgU-CA- -5'
13934 5' -59.7 NC_003521.1 + 129982 0.66 0.8262
Target:  5'- cGGCgUCGaCgGGC-CGCGGCcgGCAGa -3'
miRNA:   3'- aCCGgAGC-GgUCGuGUGUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 215708 0.71 0.513218
Target:  5'- cGGCCUggCGCCAGCACccGCGGCUcuGCu-- -3'
miRNA:   3'- aCCGGA--GCGGUCGUG--UGUCGA--CGuca -5'
13934 5' -59.7 NC_003521.1 + 154913 0.71 0.532217
Target:  5'- cGGCCUCgGCCAGCGgCACGuGCUuGCuGa -3'
miRNA:   3'- aCCGGAG-CGGUCGU-GUGU-CGA-CGuCa -5'
13934 5' -59.7 NC_003521.1 + 43240 0.7 0.570916
Target:  5'- aGGUCgucggugggCGCCGGCgggucgcgcucGCugGGCUGCAGg -3'
miRNA:   3'- aCCGGa--------GCGGUCG-----------UGugUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 221205 0.7 0.600383
Target:  5'- cGGCCgCGUCGGCGCugAuccuGCUGCuGUu -3'
miRNA:   3'- aCCGGaGCGGUCGUGugU----CGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 104503 0.69 0.630047
Target:  5'- aGGCCugcagcUCGCgCAGCuccacguccucGCugGGCUGCAGc -3'
miRNA:   3'- aCCGG------AGCG-GUCG-----------UGugUCGACGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.