miRNA display CGI


Results 101 - 120 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 235227 0.68 0.698961
Target:  5'- aGGCCUCGUUGGUcCGCAGgCUGgAGc -3'
miRNA:   3'- aCCGGAGCGGUCGuGUGUC-GACgUCa -5'
13934 5' -59.7 NC_003521.1 + 167573 0.68 0.718298
Target:  5'- cGGCgCUCGUCGuCACGCcGCUGCuGUu -3'
miRNA:   3'- aCCG-GAGCGGUcGUGUGuCGACGuCA- -5'
13934 5' -59.7 NC_003521.1 + 30222 0.68 0.68921
Target:  5'- cGGCCggcCGUUGGCGuCGC-GCUGCAGg -3'
miRNA:   3'- aCCGGa--GCGGUCGU-GUGuCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 239782 0.68 0.698962
Target:  5'- gUGGCCccgaCGCCGGC-CAUcuGGCUGCGc- -3'
miRNA:   3'- -ACCGGa---GCGGUCGuGUG--UCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 144290 0.68 0.68921
Target:  5'- cGGCgaCUCGCUGcugccGCACGC-GCUGCGGUu -3'
miRNA:   3'- aCCG--GAGCGGU-----CGUGUGuCGACGUCA- -5'
13934 5' -59.7 NC_003521.1 + 213713 0.68 0.717337
Target:  5'- gGGCCUCGgggaugcCCAGcCAgACGGCgccGCAGa -3'
miRNA:   3'- aCCGGAGC-------GGUC-GUgUGUCGa--CGUCa -5'
13934 5' -59.7 NC_003521.1 + 109878 0.68 0.718298
Target:  5'- aGGCCUUGCguGCcaucucCACGGC-GCGGg -3'
miRNA:   3'- aCCGGAGCGguCGu-----GUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 224862 0.68 0.707693
Target:  5'- aGGCCguagcgcgccagcUCGUCcaggugcuuGGCGCACAGCaGCAGa -3'
miRNA:   3'- aCCGG-------------AGCGG---------UCGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 219431 0.68 0.726914
Target:  5'- gGGCCguaucccagCGCUcGCACAgcucgguCAGCUGCGGc -3'
miRNA:   3'- aCCGGa--------GCGGuCGUGU-------GUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 131472 0.73 0.397942
Target:  5'- cGGCCUCGUCGGCcuccuGCGcCGGCUGCu-- -3'
miRNA:   3'- aCCGGAGCGGUCG-----UGU-GUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 118905 0.68 0.68921
Target:  5'- aGGuCCUCGCCcucgucGGCGcCGCGGCguggGCGGc -3'
miRNA:   3'- aCC-GGAGCGG------UCGU-GUGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 102644 0.68 0.718298
Target:  5'- gGGCCUCGUCcGUgaaGCGGCUGuCGGg -3'
miRNA:   3'- aCCGGAGCGGuCGug-UGUCGAC-GUCa -5'
13934 5' -59.7 NC_003521.1 + 56072 0.7 0.600384
Target:  5'- cGGCCUCcgucaCCAGCucGCGCAGCacgcGCAGa -3'
miRNA:   3'- aCCGGAGc----GGUCG--UGUGUCGa---CGUCa -5'
13934 5' -59.7 NC_003521.1 + 70139 0.7 0.561167
Target:  5'- gGGCCUCGagcugCGGCgaGCGCGGCUGCc-- -3'
miRNA:   3'- aCCGGAGCg----GUCG--UGUGUCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 223120 0.68 0.708661
Target:  5'- cGGCCgucUCGCgCAGCAC-CAGgaGcCAGUu -3'
miRNA:   3'- aCCGG---AGCG-GUCGUGuGUCgaC-GUCA- -5'
13934 5' -59.7 NC_003521.1 + 113983 0.7 0.561167
Target:  5'- cGGCCg-GCCgGGCAC-CGGCUGCAa- -3'
miRNA:   3'- aCCGGagCGG-UCGUGuGUCGACGUca -5'
13934 5' -59.7 NC_003521.1 + 168520 0.7 0.579726
Target:  5'- cGGCgaCGCCAGCaggcuggcggccaGCGCGGCgGCGGc -3'
miRNA:   3'- aCCGgaGCGGUCG-------------UGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 154875 0.7 0.590531
Target:  5'- cGGCCUCauGCU-GCGCuACAuGCUGCAGg -3'
miRNA:   3'- aCCGGAG--CGGuCGUG-UGU-CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 148783 0.71 0.503823
Target:  5'- cGGUCgCGCCgaggAGC-CGCGGCUGCGGa -3'
miRNA:   3'- aCCGGaGCGG----UCGuGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 49858 0.72 0.485262
Target:  5'- cGGCCUCGuCCAGCAUGCucauGaugGCGGUc -3'
miRNA:   3'- aCCGGAGC-GGUCGUGUGu---Cga-CGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.