miRNA display CGI


Results 41 - 60 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 3' -53.3 NC_003521.1 + 76863 0.66 0.991511
Target:  5'- nUAGCGGCGG-CuGGACggUGGaGGCu -3'
miRNA:   3'- uGUCGCUGCCuGcCUUGuuGCUaCCG- -5'
13935 3' -53.3 NC_003521.1 + 90305 0.66 0.991511
Target:  5'- cGCGaCGACGGGCGGGcGCGAgccgccaGggGGCg -3'
miRNA:   3'- -UGUcGCUGCCUGCCU-UGUUg------CuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 43513 0.66 0.991511
Target:  5'- gAUGGCGaugagGCGGAUGGAGCGcgcccaauguGCGGcgucUGGUg -3'
miRNA:   3'- -UGUCGC-----UGCCUGCCUUGU----------UGCU----ACCG- -5'
13935 3' -53.3 NC_003521.1 + 55939 0.66 0.991511
Target:  5'- cCAGUuccucuCGGugGGGcccgACGACGAggUGGCg -3'
miRNA:   3'- uGUCGcu----GCCugCCU----UGUUGCU--ACCG- -5'
13935 3' -53.3 NC_003521.1 + 224596 0.66 0.991511
Target:  5'- uGCGGCGACGcuacgagcACGGGcuGCGGCGcucGGCu -3'
miRNA:   3'- -UGUCGCUGCc-------UGCCU--UGUUGCua-CCG- -5'
13935 3' -53.3 NC_003521.1 + 71798 0.66 0.991511
Target:  5'- uCGGCGGCGGGCucGGuGACGuCGGccGGCg -3'
miRNA:   3'- uGUCGCUGCCUG--CC-UUGUuGCUa-CCG- -5'
13935 3' -53.3 NC_003521.1 + 120498 0.66 0.991511
Target:  5'- -aGGCG-CGuGugGgGGACGACG-UGGCu -3'
miRNA:   3'- ugUCGCuGC-CugC-CUUGUUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 67133 0.66 0.991511
Target:  5'- aACAGCaGCGGGCcGcACAggACGggGGCu -3'
miRNA:   3'- -UGUCGcUGCCUGcCuUGU--UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 32963 0.66 0.991511
Target:  5'- aACGGCG-CGGAcaaCGGAACcagAAgGAgcccUGGCg -3'
miRNA:   3'- -UGUCGCuGCCU---GCCUUG---UUgCU----ACCG- -5'
13935 3' -53.3 NC_003521.1 + 164370 0.66 0.991511
Target:  5'- cACAGCGACcuccagcGACGGuaaccccaacGACAACGGUcGCc -3'
miRNA:   3'- -UGUCGCUGc------CUGCC----------UUGUUGCUAcCG- -5'
13935 3' -53.3 NC_003521.1 + 143096 0.66 0.9914
Target:  5'- cGCAGCcGCcgccggaGGAUGaGGACGACGAgucGGCc -3'
miRNA:   3'- -UGUCGcUG-------CCUGC-CUUGUUGCUa--CCG- -5'
13935 3' -53.3 NC_003521.1 + 146788 0.66 0.9914
Target:  5'- uGCAGgaGACGGACGaugauccggaccuGGACGACGAgcGCu -3'
miRNA:   3'- -UGUCg-CUGCCUGC-------------CUUGUUGCUacCG- -5'
13935 3' -53.3 NC_003521.1 + 24326 0.66 0.991288
Target:  5'- cACAGCGACGauccgaugaaucggcGGCGGGACcuGAaggugcuggugaugcUGAUGGUa -3'
miRNA:   3'- -UGUCGCUGC---------------CUGCCUUG--UU---------------GCUACCG- -5'
13935 3' -53.3 NC_003521.1 + 138687 0.66 0.991175
Target:  5'- cCGGCGACaaggccgugagccuGGGCGGcACgGGCGcUGGCu -3'
miRNA:   3'- uGUCGCUG--------------CCUGCCuUG-UUGCuACCG- -5'
13935 3' -53.3 NC_003521.1 + 167690 0.66 0.991175
Target:  5'- uGCGGUGACGacgcucguggaggaGGCGGcgguAGCAGCGGuagUGGUa -3'
miRNA:   3'- -UGUCGCUGC--------------CUGCC----UUGUUGCU---ACCG- -5'
13935 3' -53.3 NC_003521.1 + 125217 0.66 0.990828
Target:  5'- -uGGCGGCGGcaacGCGGGagaaaaagaaacgacGCGcACGggGGCg -3'
miRNA:   3'- ugUCGCUGCC----UGCCU---------------UGU-UGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 163918 0.66 0.990349
Target:  5'- gGguGCGGCGGcaGCGG--CAACGAaagaGGCg -3'
miRNA:   3'- -UguCGCUGCC--UGCCuuGUUGCUa---CCG- -5'
13935 3' -53.3 NC_003521.1 + 46431 0.66 0.990349
Target:  5'- --uGCGAgGGuauccgGCGGGGCuGCGggGGCu -3'
miRNA:   3'- uguCGCUgCC------UGCCUUGuUGCuaCCG- -5'
13935 3' -53.3 NC_003521.1 + 115682 0.66 0.990349
Target:  5'- -aGGCGGCcaGGCGGAACAGcCGGUGu- -3'
miRNA:   3'- ugUCGCUGc-CUGCCUUGUU-GCUACcg -5'
13935 3' -53.3 NC_003521.1 + 110418 0.66 0.990349
Target:  5'- uCAGCGugaGCGuGAgaaCGGAGCGGCGGuuguUGGUg -3'
miRNA:   3'- uGUCGC---UGC-CU---GCCUUGUUGCU----ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.