miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 124146 0.68 0.710613
Target:  5'- -cGCUGCCucCGCCGcCGCUGCcgUGCa -3'
miRNA:   3'- gcCGACGGcaGUGGCaGCGACG--ACGa -5'
13935 5' -60.7 NC_003521.1 + 126971 0.69 0.633853
Target:  5'- cCGcGCcGUCGUCGCCGgccgcccCGCUGCcGCUg -3'
miRNA:   3'- -GC-CGaCGGCAGUGGCa------GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 127027 0.68 0.701147
Target:  5'- gGGcCUGCCGgacuUCA-CGUCGCUGCaguucgUGCUg -3'
miRNA:   3'- gCC-GACGGC----AGUgGCAGCGACG------ACGA- -5'
13935 5' -60.7 NC_003521.1 + 127046 0.71 0.547496
Target:  5'- uCGcGCUgGCCGUCGCCGUCGUcgacGCgGCc -3'
miRNA:   3'- -GC-CGA-CGGCAGUGGCAGCGa---CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 129970 0.75 0.336929
Target:  5'- -cGCUGCucuaCGUgCACCGUCGCUGCcGCUg -3'
miRNA:   3'- gcCGACG----GCA-GUGGCAGCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 133333 0.71 0.547496
Target:  5'- gCGGCUGCgaUgGCUGUgacUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGgcAgUGGCA---GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 134151 0.69 0.653191
Target:  5'- -uGCUGCUGUagCACCGaUUGCaGCUGCUc -3'
miRNA:   3'- gcCGACGGCA--GUGGC-AGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 134516 0.68 0.701147
Target:  5'- aGGCgaugcgcacgGCCGcCGCCugGUUGCUGUUGCc -3'
miRNA:   3'- gCCGa---------CGGCaGUGG--CAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 142104 0.67 0.738622
Target:  5'- cCGGgaGCCGUagGCgCGUCGCaggaacuggUGCUGUUg -3'
miRNA:   3'- -GCCgaCGGCAg-UG-GCAGCG---------ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 142276 0.66 0.800711
Target:  5'- gGGCUcggGCUGggaccCGCCGcCGCUGCaGCg -3'
miRNA:   3'- gCCGA---CGGCa----GUGGCaGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 142940 0.81 0.147357
Target:  5'- -aGCUGCUGcCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- gcCGACGGCaGUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 143161 0.67 0.756892
Target:  5'- cCGGCUgauggcGCCGcUCuccaagggAUCGcCGCUGCUGCg -3'
miRNA:   3'- -GCCGA------CGGC-AG--------UGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 143199 0.69 0.643526
Target:  5'- -cGCUGaCCcUgACCGcCGCUGCUGCa -3'
miRNA:   3'- gcCGAC-GGcAgUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 143597 0.66 0.817337
Target:  5'- gCGGaCUGCUGacggcCACCG--GCUGCUGCc -3'
miRNA:   3'- -GCC-GACGGCa----GUGGCagCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 143809 0.7 0.566465
Target:  5'- gCGGCUGCugcuCGUCGCCGgcggCGC-GCgUGCg -3'
miRNA:   3'- -GCCGACG----GCAGUGGCa---GCGaCG-ACGa -5'
13935 5' -60.7 NC_003521.1 + 145596 0.83 0.107075
Target:  5'- gCGGCgGCCGUgGCC-UCGCUGCUGCa -3'
miRNA:   3'- -GCCGaCGGCAgUGGcAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 149398 0.71 0.518512
Target:  5'- gGGCUucgugGCCGUgGCCGUCacggacgagcaguGCUGuCUGCUg -3'
miRNA:   3'- gCCGA-----CGGCAgUGGCAG-------------CGAC-GACGA- -5'
13935 5' -60.7 NC_003521.1 + 149808 0.73 0.397752
Target:  5'- aCGGCcgGCCGUgACCGaC-CUGCUGCa -3'
miRNA:   3'- -GCCGa-CGGCAgUGGCaGcGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 150248 0.7 0.585599
Target:  5'- gCGGgUGCgCGcCGCCcgUGCUGCUGCUg -3'
miRNA:   3'- -GCCgACG-GCaGUGGcaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 150665 0.7 0.566465
Target:  5'- gCGGCUcuCCGgcggCGgCGcCGCUGCUGCUg -3'
miRNA:   3'- -GCCGAc-GGCa---GUgGCaGCGACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.