Results 121 - 140 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 167572 | 0.71 | 0.491965 |
Target: 5'- aCGGCgcucGUCGUCA-CGcCGCUGCUGUUg -3' miRNA: 3'- -GCCGa---CGGCAGUgGCaGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 168610 | 0.75 | 0.308489 |
Target: 5'- gGGCUGCUGggcgugCGCCaucugcuGUUGCUGCUGCg -3' miRNA: 3'- gCCGACGGCa-----GUGG-------CAGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 168947 | 0.82 | 0.124194 |
Target: 5'- gGGCcgccGCUGUCGCCGUCGCUcccGCUGCUg -3' miRNA: 3'- gCCGa---CGGCAGUGGCAGCGA---CGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 180341 | 0.67 | 0.738622 |
Target: 5'- uGGUuucUGCUaGUgGCCGUCGUgacggUGCUGCUc -3' miRNA: 3'- gCCG---ACGG-CAgUGGCAGCG-----ACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 187645 | 0.77 | 0.25894 |
Target: 5'- aGGCuguUGCCGcugcUCACCGUCGUcgggaUGCUGCUg -3' miRNA: 3'- gCCG---ACGGC----AGUGGCAGCG-----ACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 187809 | 0.69 | 0.624178 |
Target: 5'- aCGGCUGCaCGaaGUCGUgGCUGUUGCg -3' miRNA: 3'- -GCCGACG-GCagUGGCAgCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 188154 | 0.67 | 0.729358 |
Target: 5'- -cGCUGCCGgUGCCGcUGCUGCcGCUc -3' miRNA: 3'- gcCGACGGCaGUGGCaGCGACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 188763 | 0.68 | 0.682068 |
Target: 5'- cCGGCccCgCGUCAuCUGcCGCUGCUGCUc -3' miRNA: 3'- -GCCGacG-GCAGU-GGCaGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 191401 | 0.68 | 0.710613 |
Target: 5'- gCGGC-GCUGUCGCCGUCaGC--CUGCc -3' miRNA: 3'- -GCCGaCGGCAGUGGCAG-CGacGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 192480 | 0.67 | 0.738622 |
Target: 5'- aCGGCggucgGCUGaUCACCGUguccaCGCUGguaCUGCUc -3' miRNA: 3'- -GCCGa----CGGC-AGUGGCA-----GCGAC---GACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 192662 | 0.69 | 0.624178 |
Target: 5'- aGGC-GCUGgaacagCACCGUCaGCUGCUGa- -3' miRNA: 3'- gCCGaCGGCa-----GUGGCAG-CGACGACga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 193188 | 0.7 | 0.608713 |
Target: 5'- gGGCUcGCCGUCcugauggcccugacgGCCuUCGC-GCUGCUg -3' miRNA: 3'- gCCGA-CGGCAG---------------UGGcAGCGaCGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 195652 | 0.69 | 0.662841 |
Target: 5'- uCGGCgcggucaugGCC-UCGCCGUgGCgUGUUGCUg -3' miRNA: 3'- -GCCGa--------CGGcAGUGGCAgCG-ACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 196995 | 0.66 | 0.817337 |
Target: 5'- aGGCgccGCCGccacCACCGUCGCcGCcgGUg -3' miRNA: 3'- gCCGa--CGGCa---GUGGCAGCGaCGa-CGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 201601 | 0.7 | 0.576014 |
Target: 5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3' miRNA: 3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 201792 | 0.73 | 0.405836 |
Target: 5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3' miRNA: 3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 202327 | 0.66 | 0.808264 |
Target: 5'- cCGGuCUGUCGUcCGCCaugcugaggagacGUCGUgGCUGCa -3' miRNA: 3'- -GCC-GACGGCA-GUGG-------------CAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 202662 | 0.72 | 0.482956 |
Target: 5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3' miRNA: 3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 203978 | 0.73 | 0.430694 |
Target: 5'- cCGGCUGCUGcUGCCGUCGCUaCUgGCg -3' miRNA: 3'- -GCCGACGGCaGUGGCAGCGAcGA-CGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 204727 | 0.69 | 0.624178 |
Target: 5'- gGGCUGgCGUgGCgCGgcuUCGCgUGCUGCUu -3' miRNA: 3'- gCCGACgGCAgUG-GC---AGCG-ACGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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