miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 123496 0.69 0.643526
Target:  5'- cCGGCggGgUGUCGUCGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa-CgGCAGUGGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 122877 0.77 0.23643
Target:  5'- uGGUUgacgacGCCGUCACCGcucgCGUUGCUGCUa -3'
miRNA:   3'- gCCGA------CGGCAGUGGCa---GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 122192 0.66 0.824626
Target:  5'- gGGCUGgCGaCGCCcUCGCgacuccaUGCUGCc -3'
miRNA:   3'- gCCGACgGCaGUGGcAGCG-------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 121030 0.7 0.604853
Target:  5'- uCGGCggcGCCGaCcUCGUCGCcGCUGCg -3'
miRNA:   3'- -GCCGa--CGGCaGuGGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 120328 0.66 0.809096
Target:  5'- uCGaGacaUGCgGUgGCCGcUGCUGCUGCUu -3'
miRNA:   3'- -GC-Cg--ACGgCAgUGGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 119965 0.67 0.738622
Target:  5'- aGGCUGgUGgaCGCCGUggaGCUGCUGUc -3'
miRNA:   3'- gCCGACgGCa-GUGGCAg--CGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 118764 0.7 0.556957
Target:  5'- uCGGCgGCCGUgCGCaCGUCGCccugcaucucGCUGCg -3'
miRNA:   3'- -GCCGaCGGCA-GUG-GCAGCGa---------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 118543 0.68 0.69163
Target:  5'- aGuGCUGCUGcUACCGcCGCUGgUGCc -3'
miRNA:   3'- gC-CGACGGCaGUGGCaGCGACgACGa -5'
13935 5' -60.7 NC_003521.1 + 117165 0.69 0.643526
Target:  5'- cCGGCUcccuccaaGCCuaaccCGCCGUCGCUGCcGCc -3'
miRNA:   3'- -GCCGA--------CGGca---GUGGCAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 117101 0.68 0.69163
Target:  5'- uCGGCgGCCGUCAgguCUGgaaacCGCUGCaGCa -3'
miRNA:   3'- -GCCGaCGGCAGU---GGCa----GCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 116206 0.71 0.528731
Target:  5'- aGGgaGaCGUCGCCGUCGCcGCcGCUu -3'
miRNA:   3'- gCCgaCgGCAGUGGCAGCGaCGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 114933 0.7 0.556957
Target:  5'- gCGGCUGCUGgagaGCUGcUCGCgcagcggcgGCUGCUg -3'
miRNA:   3'- -GCCGACGGCag--UGGC-AGCGa--------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 113499 0.67 0.765884
Target:  5'- uGGCccucaugGCCGUCACCGagagcgugCGCaGCgGCUg -3'
miRNA:   3'- gCCGa------CGGCAGUGGCa-------GCGaCGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 113344 0.66 0.79219
Target:  5'- cCGGCgGCCGUCugCGccUCGUagcccggaaggUGCUGg- -3'
miRNA:   3'- -GCCGaCGGCAGugGC--AGCG-----------ACGACga -5'
13935 5' -60.7 NC_003521.1 + 111438 0.71 0.528731
Target:  5'- gCGGC-GCCGUCGCCGggGCgGCcGCg -3'
miRNA:   3'- -GCCGaCGGCAGUGGCagCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 106070 0.73 0.414022
Target:  5'- uGGCUGCCGggCACCGUgGC--CUGCg -3'
miRNA:   3'- gCCGACGGCa-GUGGCAgCGacGACGa -5'
13935 5' -60.7 NC_003521.1 + 105515 0.66 0.79219
Target:  5'- uGGgUGCCGUCacACCGUCaggaUGCUGg- -3'
miRNA:   3'- gCCgACGGCAG--UGGCAGcg--ACGACga -5'
13935 5' -60.7 NC_003521.1 + 103042 0.72 0.456423
Target:  5'- cCGGC-GCCGUCAUCGcgcagcCGCUGCcGCUc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCa-----GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 100262 0.66 0.783541
Target:  5'- aCGaGCUGUCGcCGCCGcCGCcGCaGCa -3'
miRNA:   3'- -GC-CGACGGCaGUGGCaGCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 97064 0.66 0.783541
Target:  5'- aCGcGCgaucgUGCCcguagCGCCGcCGCUGCUGCc -3'
miRNA:   3'- -GC-CG-----ACGGca---GUGGCaGCGACGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.