miRNA display CGI


Results 141 - 160 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 153872 0.7 0.585599
Target:  5'- gGaGCUGCUGagCGCCaaccuggCGCUGCUGCUg -3'
miRNA:   3'- gC-CGACGGCa-GUGGca-----GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 150248 0.7 0.585599
Target:  5'- gCGGgUGCgCGcCGCCcgUGCUGCUGCUg -3'
miRNA:   3'- -GCCgACG-GCaGUGGcaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 164024 0.7 0.604853
Target:  5'- -uGUUGCCGcCGCCGUgagcgcCGCUGUUGCc -3'
miRNA:   3'- gcCGACGGCaGUGGCA------GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 63422 0.7 0.604853
Target:  5'- gGGCgGCgCGUCgAUCGUCagcccgcgcaGCUGCUGCUc -3'
miRNA:   3'- gCCGaCG-GCAG-UGGCAG----------CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 56449 0.7 0.604853
Target:  5'- gCGGCUGaUgGUCAacCUGUCGC-GCUGCg -3'
miRNA:   3'- -GCCGAC-GgCAGU--GGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 193188 0.7 0.608713
Target:  5'- gGGCUcGCCGUCcugauggcccugacgGCCuUCGC-GCUGCUg -3'
miRNA:   3'- gCCGA-CGGCAG---------------UGGcAGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 167293 0.69 0.614509
Target:  5'- aCGGaCUgGCCGUCAUCGUCGCcgGCa--- -3'
miRNA:   3'- -GCC-GA-CGGCAGUGGCAGCGa-CGacga -5'
13935 5' -60.7 NC_003521.1 + 192662 0.69 0.624178
Target:  5'- aGGC-GCUGgaacagCACCGUCaGCUGCUGa- -3'
miRNA:   3'- gCCGaCGGCa-----GUGGCAG-CGACGACga -5'
13935 5' -60.7 NC_003521.1 + 17300 0.7 0.576014
Target:  5'- gGuGCUGCCGUUGUCGUCGCUccucuucccGCUGUUg -3'
miRNA:   3'- gC-CGACGGCAGUGGCAGCGA---------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 88772 0.7 0.566465
Target:  5'- aCGGCUGCgaGUCGCUG-CGCgUGCcGCUc -3'
miRNA:   3'- -GCCGACGg-CAGUGGCaGCG-ACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 58995 0.71 0.515739
Target:  5'- uGGCUGCUG-CACCGcCGCcuggagacgguggGCUGCg -3'
miRNA:   3'- gCCGACGGCaGUGGCaGCGa------------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 60283 0.71 0.519438
Target:  5'- aGGUgagGCCGgUGCUGUCGC-GCUGCUg -3'
miRNA:   3'- gCCGa--CGGCaGUGGCAGCGaCGACGA- -5'
13935 5' -60.7 NC_003521.1 + 111438 0.71 0.528731
Target:  5'- gCGGC-GCCGUCGCCGggGCgGCcGCg -3'
miRNA:   3'- -GCCGaCGGCAGUGGCagCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 45888 0.71 0.538085
Target:  5'- gCGGCggugGCCGUCugCGUCgGC-GCUGa- -3'
miRNA:   3'- -GCCGa---CGGCAGugGCAG-CGaCGACga -5'
13935 5' -60.7 NC_003521.1 + 133333 0.71 0.547496
Target:  5'- gCGGCUGCgaUgGCUGUgacUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGgcAgUGGCA---GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 67389 0.71 0.547496
Target:  5'- gCGGC--CCGcUGCUGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGacGGCaGUGGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 71217 0.71 0.547496
Target:  5'- uGGCU-CCGUCcggaGCCGcuccgcUCGCUGCUGUg -3'
miRNA:   3'- gCCGAcGGCAG----UGGC------AGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 31263 0.71 0.551274
Target:  5'- cCGGC-GCCGUCGucgccccaucccgauCCG-CaGCUGCUGCUg -3'
miRNA:   3'- -GCCGaCGGCAGU---------------GGCaG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 143809 0.7 0.566465
Target:  5'- gCGGCUGCugcuCGUCGCCGgcggCGC-GCgUGCg -3'
miRNA:   3'- -GCCGACG----GCAGUGGCa---GCGaCG-ACGa -5'
13935 5' -60.7 NC_003521.1 + 164818 0.69 0.624178
Target:  5'- uGGCgagagGaagaGUCGCUGcCGCUGCUGCg -3'
miRNA:   3'- gCCGa----Cgg--CAGUGGCaGCGACGACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.