miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 118543 0.68 0.69163
Target:  5'- aGuGCUGCUGcUACCGcCGCUGgUGCc -3'
miRNA:   3'- gC-CGACGGCaGUGGCaGCGACgACGa -5'
13935 5' -60.7 NC_003521.1 + 166753 0.68 0.682068
Target:  5'- gCGGC-GCCc-CGCUGgauggCGCUGCUGCg -3'
miRNA:   3'- -GCCGaCGGcaGUGGCa----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 85126 0.69 0.662841
Target:  5'- gGGCgGCCuUCuACCGUaCGgUGCUGCg -3'
miRNA:   3'- gCCGaCGGcAG-UGGCA-GCgACGACGa -5'
13935 5' -60.7 NC_003521.1 + 143199 0.69 0.643526
Target:  5'- -cGCUGaCCcUgACCGcCGCUGCUGCa -3'
miRNA:   3'- gcCGAC-GGcAgUGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 192662 0.69 0.624178
Target:  5'- aGGC-GCUGgaacagCACCGUCaGCUGCUGa- -3'
miRNA:   3'- gCCGaCGGCa-----GUGGCAG-CGACGACga -5'
13935 5' -60.7 NC_003521.1 + 63422 0.7 0.604853
Target:  5'- gGGCgGCgCGUCgAUCGUCagcccgcgcaGCUGCUGCUc -3'
miRNA:   3'- gCCGaCG-GCAG-UGGCAG----------CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 153872 0.7 0.585599
Target:  5'- gGaGCUGCUGagCGCCaaccuggCGCUGCUGCUg -3'
miRNA:   3'- gC-CGACGGCa-GUGGca-----GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 119965 0.67 0.738622
Target:  5'- aGGCUGgUGgaCGCCGUggaGCUGCUGUc -3'
miRNA:   3'- gCCGACgGCa-GUGGCAg--CGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 142104 0.67 0.738622
Target:  5'- cCGGgaGCCGUagGCgCGUCGCaggaacuggUGCUGUUg -3'
miRNA:   3'- -GCCgaCGGCAg-UG-GCAGCG---------ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 113499 0.67 0.765884
Target:  5'- uGGCccucaugGCCGUCACCGagagcgugCGCaGCgGCUg -3'
miRNA:   3'- gCCGa------CGGCAGUGGCa-------GCGaCGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 50278 0.67 0.765884
Target:  5'- -uGCaGCCGgguCCGcCGCUGCUGCc -3'
miRNA:   3'- gcCGaCGGCaguGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 54122 0.67 0.765884
Target:  5'- cCGGa-GCCGUCGUCGU-GCaUGCUGCUa -3'
miRNA:   3'- -GCCgaCGGCAGUGGCAgCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 201601 0.7 0.576014
Target:  5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 234322 0.7 0.603887
Target:  5'- cCGGUgagccucUGCCGUCACCGccucCGCUGCcggaccUGCc -3'
miRNA:   3'- -GCCG-------ACGGCAGUGGCa---GCGACG------ACGa -5'
13935 5' -60.7 NC_003521.1 + 74753 0.66 0.79219
Target:  5'- cCGaCUGgCGUCGCCGUCGaCgugGCUGg- -3'
miRNA:   3'- -GCcGACgGCAGUGGCAGC-Ga--CGACga -5'
13935 5' -60.7 NC_003521.1 + 53647 0.66 0.79219
Target:  5'- aGGCggGCCGUCuCCGcaCGUUGCUuccGCUc -3'
miRNA:   3'- gCCGa-CGGCAGuGGCa-GCGACGA---CGA- -5'
13935 5' -60.7 NC_003521.1 + 201792 0.73 0.405836
Target:  5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 100262 0.66 0.783541
Target:  5'- aCGaGCUGUCGcCGCCGcCGCcGCaGCa -3'
miRNA:   3'- -GC-CGACGGCaGUGGCaGCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 233186 0.67 0.778292
Target:  5'- gCGGCcGCCGUUACCGUCGgUcguucccgacaguccGCcGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAGCgA---------------CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 64149 0.67 0.774769
Target:  5'- gGGCaacGCCGUCAaCGaguacUCGCUGCUGg- -3'
miRNA:   3'- gCCGa--CGGCAGUgGC-----AGCGACGACga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.