miRNA display CGI


Results 101 - 120 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 233186 0.67 0.778292
Target:  5'- gCGGCcGCCGUUACCGUCGgUcguucccgacaguccGCcGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAGCgA---------------CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 164452 0.81 0.136983
Target:  5'- gCGGCcgcgGCCGUCACgGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa---CGGCAGUGgCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 64149 0.67 0.774769
Target:  5'- gGGCaacGCCGUCAaCGaguacUCGCUGCUGg- -3'
miRNA:   3'- gCCGa--CGGCAGUgGC-----AGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 192480 0.67 0.738622
Target:  5'- aCGGCggucgGCUGaUCACCGUguccaCGCUGguaCUGCUc -3'
miRNA:   3'- -GCCGa----CGGC-AGUGGCA-----GCGAC---GACGA- -5'
13935 5' -60.7 NC_003521.1 + 180341 0.67 0.738622
Target:  5'- uGGUuucUGCUaGUgGCCGUCGUgacggUGCUGCUc -3'
miRNA:   3'- gCCG---ACGG-CAgUGGCAGCG-----ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 100262 0.66 0.783541
Target:  5'- aCGaGCUGUCGcCGCCGcCGCcGCaGCa -3'
miRNA:   3'- -GC-CGACGGCaGUGGCaGCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 223836 0.68 0.701147
Target:  5'- gGGCgccUGCUGUCcCUG-CgGCUGCUGCUg -3'
miRNA:   3'- gCCG---ACGGCAGuGGCaG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 234322 0.7 0.603887
Target:  5'- cCGGUgagccucUGCCGUCACCGccucCGCUGCcggaccUGCc -3'
miRNA:   3'- -GCCG-------ACGGCAGUGGCa---GCGACG------ACGa -5'
13935 5' -60.7 NC_003521.1 + 201601 0.7 0.576014
Target:  5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 43871 0.7 0.576014
Target:  5'- cCGGCUcccggGCCGUCGCCcaCGCuaccggUGCUGCc -3'
miRNA:   3'- -GCCGA-----CGGCAGUGGcaGCG------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 150665 0.7 0.566465
Target:  5'- gCGGCUcuCCGgcggCGgCGcCGCUGCUGCUg -3'
miRNA:   3'- -GCCGAc-GGCa---GUgGCaGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 166623 0.7 0.556957
Target:  5'- -uGCUGCUGUCcCUGUagcaGCUGUUGCUg -3'
miRNA:   3'- gcCGACGGCAGuGGCAg---CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 118764 0.7 0.556957
Target:  5'- uCGGCgGCCGUgCGCaCGUCGCccugcaucucGCUGCg -3'
miRNA:   3'- -GCCGaCGGCA-GUG-GCAGCGa---------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 114933 0.7 0.556957
Target:  5'- gCGGCUGCUGgagaGCUGcUCGCgcagcggcgGCUGCUg -3'
miRNA:   3'- -GCCGACGGCag--UGGC-AGCGa--------CGACGA- -5'
13935 5' -60.7 NC_003521.1 + 127046 0.71 0.547496
Target:  5'- uCGcGCUgGCCGUCGCCGUCGUcgacGCgGCc -3'
miRNA:   3'- -GC-CGA-CGGCAGUGGCAGCGa---CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 79549 0.68 0.710613
Target:  5'- -cGCUGCUGcuacuguugcCGCCGUCGCUGCU-CUg -3'
miRNA:   3'- gcCGACGGCa---------GUGGCAGCGACGAcGA- -5'
13935 5' -60.7 NC_003521.1 + 124146 0.68 0.710613
Target:  5'- -cGCUGCCucCGCCGcCGCUGCcgUGCa -3'
miRNA:   3'- gcCGACGGcaGUGGCaGCGACG--ACGa -5'
13935 5' -60.7 NC_003521.1 + 96771 0.67 0.729358
Target:  5'- aCGGUcGCCGUCGCCGcCgGCaGCaGCg -3'
miRNA:   3'- -GCCGaCGGCAGUGGCaG-CGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 188154 0.67 0.729358
Target:  5'- -cGCUGCCGgUGCCGcUGCUGCcGCUc -3'
miRNA:   3'- gcCGACGGCaGUGGCaGCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 49824 0.67 0.738622
Target:  5'- aGGCUGCCcacGUcCACCuG-CGCcUGCUGCc -3'
miRNA:   3'- gCCGACGG---CA-GUGG-CaGCG-ACGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.