miRNA display CGI


Results 121 - 140 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 53647 0.66 0.79219
Target:  5'- aGGCggGCCGUCuCCGcaCGUUGCUuccGCUc -3'
miRNA:   3'- gCCGa-CGGCAGuGGCa-GCGACGA---CGA- -5'
13935 5' -60.7 NC_003521.1 + 223780 0.67 0.756892
Target:  5'- uCGGC-GCCGUUACCGcCGUggGCcGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCaGCGa-CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 113499 0.67 0.765884
Target:  5'- uGGCccucaugGCCGUCACCGagagcgugCGCaGCgGCUg -3'
miRNA:   3'- gCCGa------CGGCAGUGGCa-------GCGaCGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 50278 0.67 0.765884
Target:  5'- -uGCaGCCGgguCCGcCGCUGCUGCc -3'
miRNA:   3'- gcCGaCGGCaguGGCaGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 54122 0.67 0.765884
Target:  5'- cCGGa-GCCGUCGUCGU-GCaUGCUGCUa -3'
miRNA:   3'- -GCCgaCGGCAGUGGCAgCG-ACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 134516 0.68 0.701147
Target:  5'- aGGCgaugcgcacgGCCGcCGCCugGUUGCUGUUGCc -3'
miRNA:   3'- gCCGa---------CGGCaGUGG--CAGCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 65988 0.68 0.69163
Target:  5'- uGGCcacGCCGgaCACCaaGUCGCUGCUGg- -3'
miRNA:   3'- gCCGa--CGGCa-GUGG--CAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 38075 0.68 0.69163
Target:  5'- gGGUUGUgGUgGCCGUCGCUG--GCa -3'
miRNA:   3'- gCCGACGgCAgUGGCAGCGACgaCGa -5'
13935 5' -60.7 NC_003521.1 + 234322 0.7 0.603887
Target:  5'- cCGGUgagccucUGCCGUCACCGccucCGCUGCcggaccUGCc -3'
miRNA:   3'- -GCCG-------ACGGCAGUGGCa---GCGACG------ACGa -5'
13935 5' -60.7 NC_003521.1 + 74753 0.66 0.79219
Target:  5'- cCGaCUGgCGUCGCCGUCGaCgugGCUGg- -3'
miRNA:   3'- -GCcGACgGCAGUGGCAGC-Ga--CGACga -5'
13935 5' -60.7 NC_003521.1 + 100262 0.66 0.783541
Target:  5'- aCGaGCUGUCGcCGCCGcCGCcGCaGCa -3'
miRNA:   3'- -GC-CGACGGCaGUGGCaGCGaCGaCGa -5'
13935 5' -60.7 NC_003521.1 + 30398 0.72 0.474027
Target:  5'- -cGCUGCCGUCGCCGcccaCGCcgaccacGCUGCg -3'
miRNA:   3'- gcCGACGGCAGUGGCa---GCGa------CGACGa -5'
13935 5' -60.7 NC_003521.1 + 233186 0.67 0.778292
Target:  5'- gCGGCcGCCGUUACCGUCGgUcguucccgacaguccGCcGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAGCgA---------------CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 126971 0.69 0.633853
Target:  5'- cCGcGCcGUCGUCGCCGgccgcccCGCUGCcGCUg -3'
miRNA:   3'- -GC-CGaCGGCAGUGGCa------GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 117165 0.69 0.643526
Target:  5'- cCGGCUcccuccaaGCCuaaccCGCCGUCGCUGCcGCc -3'
miRNA:   3'- -GCCGA--------CGGca---GUGGCAGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 123496 0.69 0.643526
Target:  5'- cCGGCggGgUGUCGUCGUCGCcGCUGCc -3'
miRNA:   3'- -GCCGa-CgGCAGUGGCAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 42612 0.69 0.653191
Target:  5'- aCGGCcGCCGgcggCGCCGUCGCcGCc--- -3'
miRNA:   3'- -GCCGaCGGCa---GUGGCAGCGaCGacga -5'
13935 5' -60.7 NC_003521.1 + 52458 0.69 0.662841
Target:  5'- gCGGCUGUCGcguuaucccuuUCACCGUCGaaGCaacgGCg -3'
miRNA:   3'- -GCCGACGGC-----------AGUGGCAGCgaCGa---CGa -5'
13935 5' -60.7 NC_003521.1 + 151086 0.69 0.662841
Target:  5'- cCGGCUGCCGUCACCGcCcCcG-UGCc -3'
miRNA:   3'- -GCCGACGGCAGUGGCaGcGaCgACGa -5'
13935 5' -60.7 NC_003521.1 + 188763 0.68 0.682068
Target:  5'- cCGGCccCgCGUCAuCUGcCGCUGCUGCUc -3'
miRNA:   3'- -GCCGacG-GCAGU-GGCaGCGACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.