Results 1 - 20 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13935 | 5' | -60.7 | NC_003521.1 | + | 5789 | 1.08 | 0.002077 |
Target: 5'- cCGGCUGCCGUCACCGUCGCUGCUGCUa -3' miRNA: 3'- -GCCGACGGCAGUGGCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 74961 | 0.84 | 0.08338 |
Target: 5'- -cGCUGCCGcggcgcCGCCGUCGCUGCUGCUu -3' miRNA: 3'- gcCGACGGCa-----GUGGCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 145596 | 0.83 | 0.107075 |
Target: 5'- gCGGCgGCCGUgGCC-UCGCUGCUGCa -3' miRNA: 3'- -GCCGaCGGCAgUGGcAGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 168947 | 0.82 | 0.124194 |
Target: 5'- gGGCcgccGCUGUCGCCGUCGCUcccGCUGCUg -3' miRNA: 3'- gCCGa---CGGCAGUGGCAGCGA---CGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164452 | 0.81 | 0.136983 |
Target: 5'- gCGGCcgcgGCCGUCACgGUCGCcGCUGCc -3' miRNA: 3'- -GCCGa---CGGCAGUGgCAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 142940 | 0.81 | 0.147357 |
Target: 5'- -aGCUGCUGcCGCCGUCGCUGCUGaCg -3' miRNA: 3'- gcCGACGGCaGUGGCAGCGACGAC-Ga -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 210003 | 0.8 | 0.154667 |
Target: 5'- cCGGCUGCCGUgGCUGcCGCUGC-GCa -3' miRNA: 3'- -GCCGACGGCAgUGGCaGCGACGaCGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 235210 | 0.79 | 0.187281 |
Target: 5'- aGGCUggaGCCGUCGUCGuccUCGCUGCUGCUa -3' miRNA: 3'- gCCGA---CGGCAGUGGC---AGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 187645 | 0.77 | 0.25894 |
Target: 5'- aGGCuguUGCCGcugcUCACCGUCGUcgggaUGCUGCUg -3' miRNA: 3'- gCCG---ACGGC----AGUGGCAGCG-----ACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 122877 | 0.77 | 0.23643 |
Target: 5'- uGGUUgacgacGCCGUCACCGcucgCGUUGCUGCUa -3' miRNA: 3'- gCCGA------CGGCAGUGGCa---GCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 69677 | 0.77 | 0.253153 |
Target: 5'- uGGUgcgcGCCGUCACCGUCccgcguCUGCUGCg -3' miRNA: 3'- gCCGa---CGGCAGUGGCAGc-----GACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 80027 | 0.77 | 0.253153 |
Target: 5'- gCGGCUGCUGUUucUUGUUGCUGCUGUUg -3' miRNA: 3'- -GCCGACGGCAGu-GGCAGCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 164567 | 0.76 | 0.295943 |
Target: 5'- -uGCUGCUGUUGuuGUgGCUGCUGCUg -3' miRNA: 3'- gcCGACGGCAGUggCAgCGACGACGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 37783 | 0.76 | 0.28317 |
Target: 5'- aGGUUGCCGUUGCUGUCGCUGauCUGgUa -3' miRNA: 3'- gCCGACGGCAGUGGCAGCGAC--GACgA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 30221 | 0.76 | 0.295943 |
Target: 5'- uCGGCcgGCCGUUGgCGUCGC-GCUGCa -3' miRNA: 3'- -GCCGa-CGGCAGUgGCAGCGaCGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 221931 | 0.76 | 0.276949 |
Target: 5'- gGGCUGCCGcggCGCCucguccucGUCGCUGCUcaGCUg -3' miRNA: 3'- gCCGACGGCa--GUGG--------CAGCGACGA--CGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 166796 | 0.76 | 0.270837 |
Target: 5'- uCGGacgaUGCCGcCGCCGcUGCUGCUGCg -3' miRNA: 3'- -GCCg---ACGGCaGUGGCaGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 129970 | 0.75 | 0.336929 |
Target: 5'- -cGCUGCucuaCGUgCACCGUCGCUGCcGCUg -3' miRNA: 3'- gcCGACG----GCA-GUGGCAGCGACGaCGA- -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 168610 | 0.75 | 0.308489 |
Target: 5'- gGGCUGCUGggcgugCGCCaucugcuGUUGCUGCUGCg -3' miRNA: 3'- gCCGACGGCa-----GUGG-------CAGCGACGACGa -5' |
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13935 | 5' | -60.7 | NC_003521.1 | + | 2724 | 0.74 | 0.366473 |
Target: 5'- gGGagcGCCGUCACCGccucgcuggcUgGCUGCUGCUa -3' miRNA: 3'- gCCga-CGGCAGUGGC----------AgCGACGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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