miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 239714 0.7 0.576014
Target:  5'- gGGCcaccGCUGUCcCCGagcccgCGCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGuGGCa-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 239523 0.73 0.405835
Target:  5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 238988 0.66 0.808264
Target:  5'- cCGGuCUGUCGUcCGCCaugcugaggagacGUCGUgGCUGCa -3'
miRNA:   3'- -GCC-GACGGCA-GUGG-------------CAGCGaCGACGa -5'
13935 5' -60.7 NC_003521.1 + 238653 0.72 0.482956
Target:  5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 235210 0.79 0.187281
Target:  5'- aGGCUggaGCCGUCGUCGuccUCGCUGCUGCUa -3'
miRNA:   3'- gCCGA---CGGCAGUGGC---AGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 234322 0.7 0.603887
Target:  5'- cCGGUgagccucUGCCGUCACCGccucCGCUGCcggaccUGCc -3'
miRNA:   3'- -GCCG-------ACGGCAGUGGCa---GCGACG------ACGa -5'
13935 5' -60.7 NC_003521.1 + 234087 0.67 0.738622
Target:  5'- aCGGCgGUgGaUACCGUacuugggcuggCGCUGCUGCa -3'
miRNA:   3'- -GCCGaCGgCaGUGGCA-----------GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 233186 0.67 0.778292
Target:  5'- gCGGCcGCCGUUACCGUCGgUcguucccgacaguccGCcGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCAGCgA---------------CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 223836 0.68 0.701147
Target:  5'- gGGCgccUGCUGUCcCUG-CgGCUGCUGCUg -3'
miRNA:   3'- gCCG---ACGGCAGuGGCaG-CGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 223780 0.67 0.756892
Target:  5'- uCGGC-GCCGUUACCGcCGUggGCcGCc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCaGCGa-CGaCGa -5'
13935 5' -60.7 NC_003521.1 + 223637 0.67 0.774769
Target:  5'- gGGC-GCCG-CGauGUCGCUGCUGa- -3'
miRNA:   3'- gCCGaCGGCaGUggCAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 221931 0.76 0.276949
Target:  5'- gGGCUGCCGcggCGCCucguccucGUCGCUGCUcaGCUg -3'
miRNA:   3'- gCCGACGGCa--GUGG--------CAGCGACGA--CGA- -5'
13935 5' -60.7 NC_003521.1 + 220841 0.67 0.729358
Target:  5'- aCGGCUguuuucauaaGCCGUCGCCGguaCGCUcaGCggagUGCg -3'
miRNA:   3'- -GCCGA----------CGGCAGUGGCa--GCGA--CG----ACGa -5'
13935 5' -60.7 NC_003521.1 + 219757 0.73 0.414022
Target:  5'- -aGCUGaCCGUCACCGU-GCUGCUcaGCg -3'
miRNA:   3'- gcCGAC-GGCAGUGGCAgCGACGA--CGa -5'
13935 5' -60.7 NC_003521.1 + 219440 0.68 0.682068
Target:  5'- gGGCUcaGCCGcCACUGgaacaCGCUGCgGCg -3'
miRNA:   3'- gCCGA--CGGCaGUGGCa----GCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 218707 0.72 0.453813
Target:  5'- cCGGCcauguccuccguggUGCCGcCGCUGUCGCuggccaUGCUGCg -3'
miRNA:   3'- -GCCG--------------ACGGCaGUGGCAGCG------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 218433 0.66 0.79219
Target:  5'- gGGUcGUCGUCACCuacuaccUGCUGCUGUa -3'
miRNA:   3'- gCCGaCGGCAGUGGca-----GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 218343 0.68 0.701147
Target:  5'- cCGGC-GCCGcCGCC-UCGCUG-UGCUu -3'
miRNA:   3'- -GCCGaCGGCaGUGGcAGCGACgACGA- -5'
13935 5' -60.7 NC_003521.1 + 216887 0.73 0.414022
Target:  5'- uCGGCgcgcCCGcCuACCGUCGaCUGCUGCUg -3'
miRNA:   3'- -GCCGac--GGCaG-UGGCAGC-GACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 210003 0.8 0.154667
Target:  5'- cCGGCUGCCGUgGCUGcCGCUGC-GCa -3'
miRNA:   3'- -GCCGACGGCAgUGGCaGCGACGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.