miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13935 5' -60.7 NC_003521.1 + 5789 1.08 0.002077
Target:  5'- cCGGCUGCCGUCACCGUCGCUGCUGCUa -3'
miRNA:   3'- -GCCGACGGCAGUGGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 103042 0.72 0.456423
Target:  5'- cCGGC-GCCGUCAUCGcgcagcCGCUGCcGCUc -3'
miRNA:   3'- -GCCGaCGGCAGUGGCa-----GCGACGaCGA- -5'
13935 5' -60.7 NC_003521.1 + 202662 0.72 0.482956
Target:  5'- gCGGUUGCUgcaacuGUUGCaGUUGCUGCUGCUg -3'
miRNA:   3'- -GCCGACGG------CAGUGgCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 85685 0.66 0.825428
Target:  5'- cCGGCgggggGCUGggCACCGgaggC-CUGCUGCc -3'
miRNA:   3'- -GCCGa----CGGCa-GUGGCa---GcGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 235210 0.79 0.187281
Target:  5'- aGGCUggaGCCGUCGUCGuccUCGCUGCUGCUa -3'
miRNA:   3'- gCCGA---CGGCAGUGGC---AGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 69677 0.77 0.253153
Target:  5'- uGGUgcgcGCCGUCACCGUCccgcguCUGCUGCg -3'
miRNA:   3'- gCCGa---CGGCAGUGGCAGc-----GACGACGa -5'
13935 5' -60.7 NC_003521.1 + 37783 0.76 0.28317
Target:  5'- aGGUUGCCGUUGCUGUCGCUGauCUGgUa -3'
miRNA:   3'- gCCGACGGCAGUGGCAGCGAC--GACgA- -5'
13935 5' -60.7 NC_003521.1 + 164567 0.76 0.295943
Target:  5'- -uGCUGCUGUUGuuGUgGCUGCUGCUg -3'
miRNA:   3'- gcCGACGGCAGUggCAgCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 106070 0.73 0.414022
Target:  5'- uGGCUGCCGggCACCGUgGC--CUGCg -3'
miRNA:   3'- gCCGACGGCa-GUGGCAgCGacGACGa -5'
13935 5' -60.7 NC_003521.1 + 218707 0.72 0.453813
Target:  5'- cCGGCcauguccuccguggUGCCGcCGCUGUCGCuggccaUGCUGCg -3'
miRNA:   3'- -GCCG--------------ACGGCaGUGGCAGCG------ACGACGa -5'
13935 5' -60.7 NC_003521.1 + 216887 0.73 0.414022
Target:  5'- uCGGCgcgcCCGcCuACCGUCGaCUGCUGCUg -3'
miRNA:   3'- -GCCGac--GGCaG-UGGCAGC-GACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 239523 0.73 0.405835
Target:  5'- uCGGC-GCCacaccCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- -GCCGaCGGca---GUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 74961 0.84 0.08338
Target:  5'- -cGCUGCCGcggcgcCGCCGUCGCUGCUGCUu -3'
miRNA:   3'- gcCGACGGCa-----GUGGCAGCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 203978 0.73 0.430694
Target:  5'- cCGGCUGCUGcUGCCGUCGCUaCUgGCg -3'
miRNA:   3'- -GCCGACGGCaGUGGCAGCGAcGA-CGa -5'
13935 5' -60.7 NC_003521.1 + 142940 0.81 0.147357
Target:  5'- -aGCUGCUGcCGCCGUCGCUGCUGaCg -3'
miRNA:   3'- gcCGACGGCaGUGGCAGCGACGAC-Ga -5'
13935 5' -60.7 NC_003521.1 + 42275 0.73 0.389773
Target:  5'- gCGGCgucUGUCGUgcCGCCGUguUGCUGCUGCg -3'
miRNA:   3'- -GCCG---ACGGCA--GUGGCA--GCGACGACGa -5'
13935 5' -60.7 NC_003521.1 + 73099 0.72 0.439177
Target:  5'- cCGcGCccagGCCGUCGCgGUgagccUGCUGCUGCUg -3'
miRNA:   3'- -GC-CGa---CGGCAGUGgCA-----GCGACGACGA- -5'
13935 5' -60.7 NC_003521.1 + 31351 0.72 0.474027
Target:  5'- cCGGCcGCCGcCGUCGUCGCUGUUGg- -3'
miRNA:   3'- -GCCGaCGGCaGUGGCAGCGACGACga -5'
13935 5' -60.7 NC_003521.1 + 210003 0.8 0.154667
Target:  5'- cCGGCUGCCGUgGCUGcCGCUGC-GCa -3'
miRNA:   3'- -GCCGACGGCAgUGGCaGCGACGaCGa -5'
13935 5' -60.7 NC_003521.1 + 187645 0.77 0.25894
Target:  5'- aGGCuguUGCCGcugcUCACCGUCGUcgggaUGCUGCUg -3'
miRNA:   3'- gCCG---ACGGC----AGUGGCAGCG-----ACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.